Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  158 bits (400), Expect = 3e-43
 Identities = 89/244 (36%), Positives = 147/244 (60%), Gaps = 7/244 (2%)

Query: 135 AKAKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFS 194
           AKA+ A++ ++ +N+RLV+ +  +   R  +   DL+Q G IGLM+A +KF+   G +FS
Sbjct: 373 AKARRAKKEMVEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431

Query: 195 TYATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLG 254
           TYATWWIRQA+TR I +    IR+PVH+I +I++  R  RQ+    GR    + + E + 
Sbjct: 432 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERME 491

Query: 255 WTDDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMAD-TADRPDEAVELLDIRAAVR 313
             +D   ++  +++   +S++ P+G D+   S LGD + D T   P +   +  ++ A R
Sbjct: 492 MPEDKIRKVLKIAK-EPISMETPIGDDE--DSHLGDFIEDSTMQSPIDVATVESLKEATR 548

Query: 314 SLVDDIQDERARDIVKRRFGFD-GPDETLQEIGDRYEVTRERIRQVEAKTLDKLEKRAIA 372
            ++  +    A+ +++ RFG D   D TL+E+G +++VTRERIRQ+EAK L KL     +
Sbjct: 549 DVLSGLTAREAK-VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRS 607

Query: 373 KGLR 376
           + LR
Sbjct: 608 EHLR 611