Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  157 bits (396), Expect = 1e-42
 Identities = 89/242 (36%), Positives = 148/242 (61%), Gaps = 7/242 (2%)

Query: 137 AKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTY 196
           +++A++ +I +N+RLV+ +  +   R  +   DL+Q G IGLM+A +KF+   G +FSTY
Sbjct: 496 SRDAKKEMIEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 554

Query: 197 ATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWT 256
           ATWWIRQA+TR I +    IR+PVH+I +I++  R  RQ     G      ++AE +   
Sbjct: 555 ATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEMP 614

Query: 257 DDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMADTAD-RPDEAVELLDIRAAVRSL 315
           +D   +I  +++   +S++ P+G DD   S LGD + D A+  P EA     +R  V+ +
Sbjct: 615 EDKIRKIMKIAK-EPISMETPIGDDD--DSHLGDFIEDQANTAPIEAAMQAGLREVVKEI 671

Query: 316 VDDIQDERARDIVKRRFGFD-GPDETLQEIGDRYEVTRERIRQVEAKTLDKLEKRAIAKG 374
           +D +    A+ +++ RFG +   D TL+E+G +++VTRERIRQ+E+K + KL+  + +  
Sbjct: 672 LDSLTPREAK-VLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDK 730

Query: 375 LR 376
           LR
Sbjct: 731 LR 732