Pairwise Alignments

Query, 302 a.a., Site-specific recombinase XerD from Sphingomonas koreensis DSMZ 15582

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score =  106 bits (265), Expect = 6e-28
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 24/283 (8%)

Query: 12  PLRQRLVDDMTMRR-FSPETQRNYLRDVGRFATWLGRSPH---TASAEDVRQFQIEQQEA 67
           PL  R +D + + +  S  T++ Y  D+  F  WL         A  E +      + E 
Sbjct: 7   PLIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLAWRLEQ 66

Query: 68  GVPAPTMNSIVAALRFFFNHTL-------------DRPDLARKLVRTAHARKIPVVLTLG 114
                +    ++ +R F+ + L             D P L R L ++     +  +L   
Sbjct: 67  NYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEADVEALLAAP 126

Query: 115 EVKRLLDATTCLKHQAALSVAYGAGLRVAEVSALKVSDVDSKRMVLRIERGKGGRYRNAM 174
           ++   +      + +A L V Y  GLRV E+ +L +  V+ ++ VLR+  GKG + R   
Sbjct: 127 DLSEAIGQ----RDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRV-MGKGSKERLVP 181

Query: 175 LPEGLLLLLRDWWRAARQQGIM-LPDGWLFPGQNATVPISTRQLYRVVVQAAEAADIAKR 233
           + E  ++ +  + R AR + +   P   LFP       ++ +  +  +   A+ A I K 
Sbjct: 182 MGEEAIVWVERYMRDARSELLGGRPSDVLFPSLRGE-QMTRQTFWHRIKHQAKVAGIGKA 240

Query: 234 VGPHTLRHSFATHLLEDGVDIRVIQALLGHAKLNTTAFYTQVA 276
           + PHTLRH+FATHLL  G D+RV+Q LLGH+ L+TT  YT VA
Sbjct: 241 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283