Pairwise Alignments

Query, 302 a.a., Site-specific recombinase XerD from Sphingomonas koreensis DSMZ 15582

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score =  107 bits (268), Expect = 3e-28
 Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 12  PLRQRLVDDMTMRR-FSPETQRNYLRDVGRFATWLGRSPHTASAEDVRQFQIEQQEA--- 67
           PL  + +D + + +  S  T+ +Y  D+  F  WL    H+ S  D  +  I    A   
Sbjct: 7   PLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWL--QEHSVSLPDAGRDLILDHLAWRL 64

Query: 68  --GVPAPTMNSIVAALRFFFNHTLDRP----DLARKLVRTAHARKIPVVLTLGEVKRLLD 121
             G    +    ++ LR FF + L       D   ++      + +P  L+  +V+ LL 
Sbjct: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQ 124

Query: 122 ATTC-----LKHQAALSVAYGAGLRVAEVSALKVSDVDSKRMVLRIERGKGGRYRNAMLP 176
           A         + +A L V Y  GLRV E+ +L +  V+ ++ VLR+  GKG + R   + 
Sbjct: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRV-MGKGSKERLVPMG 183

Query: 177 EGLLLLLRDWWRAARQQGIM-LPDGWLFPGQNATVPISTRQLYRVVVQAAEAADIAKRVG 235
           E  ++ L  + R  R + +   P   LFP Q     ++ +  +  +   A  A I K + 
Sbjct: 184 EEAVVWLERYQRDGRAELLNGRPSDVLFPSQRGE-QMTRQTFWHRIKHHARVAGIDKPLS 242

Query: 236 PHTLRHSFATHLLEDGVDIRVIQALLGHAKLNTTAFYTQVA 276
           PHTLRH+FATHLL  G D+RV+Q LLGH+ L+TT  YT VA
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283