Pairwise Alignments

Query, 302 a.a., Site-specific recombinase XerD from Sphingomonas koreensis DSMZ 15582

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  122 bits (305), Expect = 1e-32
 Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 18/273 (6%)

Query: 24  RRFSPETQRNYLRDVGRFATWL---GRSPHTASAEDVRQFQIEQQEAGVPAPTMNSIVAA 80
           +  +  T   Y RD+     WL   G +  TA ++D++    E+ E G  A +   +++A
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 81  LR----FFFNHTLDRPDLARKLVRTAHARKIPVVLTLGEVKRLLDATTC-----LKHQAA 131
           +R    + +       D +  L      +++P  L+  +V+RLL A        L+ +A 
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 132 LSVAYGAGLRVAEVSALKVSDVDSKRMVLRIERGKGGRYRNAMLPEGLLLLLRDWWRAAR 191
           L V Y  GLRV+E+  L +SD+  ++ V+R+  GKG + R   L E  +  L  +    R
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERLVPLGEEAVYWLETYLEHGR 197

Query: 192 Q---QGIMLPDGWLFPGQNATVPISTRQLYRVVVQAAEAADIAKRVGPHTLRHSFATHLL 248
                G+ +    LFP Q A         +R+   A  A   ++++ PH LRH+FATHLL
Sbjct: 198 PWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLL 255

Query: 249 EDGVDIRVIQALLGHAKLNTTAFYTQVATRTMR 281
             G D+RV+Q LLGH+ L+TT  YT VAT  +R
Sbjct: 256 NHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288