Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 167 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 92.4 bits (228), Expect = 3e-24
 Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 2/146 (1%)

Query: 7   LLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRNLWID 66
           LL  +PRLRR++ AL  +  DADDL+Q ++ERA  K + W     + +W++ +M NL +D
Sbjct: 7   LLSWVPRLRRYSRALVNNRDDADDLVQDTLERAWAKSNLWGGVADMRAWLFSIMHNLHVD 66

Query: 67  TIRAETRRCETFVAPQTGEIVGADGGQEMTVELGNVARAMRALPPEQREAVALVVIEGFA 126
            +R    R  T         V     Q   + + ++  A+  LP EQ+E + LV +E  A
Sbjct: 67  GVRRP--RLHTVTMDDDTPEVPVAPTQTDRLAVLDLQAALDLLPVEQKEVLLLVTLEDMA 124

Query: 127 YKEAAAILEIPMGTLTSRLVRGREAL 152
           Y + A  L IP+GT+ SRL RGRE L
Sbjct: 125 YADVAQALGIPIGTVMSRLSRGRERL 150