Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 168 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score =  101 bits (252), Expect = 5e-27
 Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 4   EDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRNL 63
           E ++   +P LRR+A AL+     ADDL+Q  +ERAL +   W   + L +W++ ++R++
Sbjct: 5   ESQIEAEIPGLRRYARALSGDVTQADDLVQDCLERALSRLALWRRDSNLRAWLFTILRHV 64

Query: 64  WIDTIRAETRRCETFVAPQTGEIVGADGGQEMTVELGNVARAMRALPPEQREAVALVVIE 123
           WID +R    R E        +   A   Q   + + ++  A+  L PEQRE V LV +E
Sbjct: 65  WIDELRRRKVRPEHGGMDDAMDSAAAAPSQMDRLAVRDLVAALALLAPEQRETVLLVGLE 124

Query: 124 GFAYKEAAAILEIPMGTLTSRLVRGRE--ALMARLGETA 160
           G  Y E A +  +P+GT+ SRL RGR+  AL+   GE A
Sbjct: 125 GLTYAEVAGVTGVPVGTVMSRLKRGRDRLALLMHGGEAA 163