Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 178 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score =  112 bits (280), Expect = 3e-30
 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 3   FEDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRN 62
           FE E+L  +P LRR++ +L+RS AD +DLLQ  VE+AL  + QW  GT L +W Y +M N
Sbjct: 16  FETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQW-RGTGLKTWAYTIMTN 74

Query: 63  LWIDTIRAETRRCETFVAPQTGEIVGADGGQEMTVELGNVARAMRALPPEQREAVALVVI 122
           L+ +  RAE R     +     E +        T+E   + RA+  L P+ R  + LV +
Sbjct: 75  LYRNRHRAEKRHPSESLDGH--ETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTV 132

Query: 123 EGFAYKEAAAILEIPMGTLTSRLVRGREALMARLGE 158
           EG++Y+EAA  L IP+GT+ SRL R RE L   L E
Sbjct: 133 EGYSYQEAAETLAIPLGTVMSRLSRARETLRQHLAE 168