Pairwise Alignments

Query, 304 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 228 a.a., hypothetical protein from Cupriavidus basilensis FW507-4G11

 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 10/199 (5%)

Query: 93  QAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQF 152
           QA  + I   QL+PGE  +E++LA+  GVS   V   + +  +  LI  E   +  + +F
Sbjct: 23  QAMLSAIISGQLKPGEVVNEIRLAQELGVSRTPVHTAIRELVKDGLITQEANRRPVVARF 82

Query: 153 DQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKT----MLERHRLLRDNIGNSFRM 208
            +    ++F++R++LE+ + +  +     D   L+A +     ++       +   +   
Sbjct: 83  SREDIREVFDMRKLLESEAAR--IAAAQLDRVTLKALSDAADAMDAGAAASVDDTEALVR 140

Query: 209 FSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNI-IAVDEHMTILS 267
           ++  D +FH   L+ AD     +  E I      H+  ++  ++   I  A+ EH  IL 
Sbjct: 141 WADFDDNFH---LAIADACGSKRLREDILRYRLLHHGLNQLRMRAELIPQALAEHRKILD 197

Query: 268 ALICRSDLDATLALRNHLN 286
           AL  R    A+ A++ HL+
Sbjct: 198 ALAARDGDAASRAMQEHLH 216



 Score = 26.9 bits (58), Expect = 4e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 5  QNLRHNVINQVIDDMARGHI-PSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGN 63
          Q L   V   ++  +  G + P  + ++  LA+   +SRT V   +  L + G++TQ  N
Sbjct: 15 QPLSQRVYQAMLSAIISGQLKPGEVVNEIRLAQELGVSRTPVHTAIRELVKDGLITQEAN 74

Query: 64 DYVIARKPDHDD 75
             +  +   +D
Sbjct: 75 RRPVVARFSRED 86