Pairwise Alignments

Query, 804 a.a., DNA gyrase subunit B (NCBI) from Escherichia coli BW25113

Subject, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

 Score =  861 bits (2224), Expect = 0.0
 Identities = 461/806 (57%), Positives = 580/806 (71%), Gaps = 19/806 (2%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64
           Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLHHMV+EVVDN IDEALAGH   ++V IH
Sbjct: 11  YGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVVVKIH 70

Query: 65  ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124
           AD+SVSV D+GRGIP GIH EEGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 71  ADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVN 130

Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTEFE 183
           ALS  LEL I R+GK H   +E G     L V G+  ++TGT VRF  S +TF+N+ E+ 
Sbjct: 131 ALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLASTDTFSNL-EYL 189

Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241
           +E L KRLREL+FLNSGV I L D+R  +  E    YEGG+K FV+YL+++K+P+     
Sbjct: 190 FETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPI 249

Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301
           Y + ++D IGVEVA+ WND + E +  FTNNIPQRDGGTH+AGFR A+TRT+N Y    G
Sbjct: 250 YITGDRDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 309

Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
            +KK KVS TGDDAREGL  V+SVKVPDPKFSSQTKDKLVSSEV+  VE  +NE LAE+ 
Sbjct: 310 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWF 369

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
            ENP  AK +VGKII+AA AREAAR+ARE+TRRK A+D+  L GKL DC E+DP+ +E++
Sbjct: 370 EENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 429

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           LVEGDSAGGSA+ GR+R  QAILPL+GKILNVE+ARFD+ML SQE+  L+ ALG GIGRD
Sbjct: 430 LVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRD 489

Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           E+N DKLRYH I+IMTDADVDG+HIRTLLLTFFYRQMPE++E G++YIAQPPLYKV +GK
Sbjct: 490 EFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVSRGK 549

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
            E Y+KD  A+D+Y I+  +DGA L    S   L G+ L ++V E    +++++     Y
Sbjct: 550 SEVYLKDQAALDEYLINQGVDGAVLKL-GSGEELVGQDLARVVDEARQLKRVLDAFPTHY 608

Query: 602 PKAMLKEL----IYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQ 657
           P+ +L++      + P   +ADL   Q V   V   +  +  + + G  W+  + T    
Sbjct: 609 PRHILEQAAVAGAFVPGAVDADL---QGVADKVAQRLDLIALEYERG--WRGRI-TQDHG 662

Query: 658 NLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVA 717
                I+R    GV+    LD   +  GE R+  +    L+      A + R +R Q + 
Sbjct: 663 IRLSRILR----GVEELRTLDGPMLRSGEARKTGSFTNSLQETYGATATLVRRDRSQAIH 718

Query: 718 SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777
                L  +++E  +GL++QRYKGLGEMNP+QLWETT+DP++R +L+V V+D + AD LF
Sbjct: 719 GPLGLLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLF 778

Query: 778 TTLMGDAVEPRRAFIEENALKAANID 803
           T LMGD VEPRR FI++NAL   N+D
Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804