Pairwise Alignments

Query, 804 a.a., DNA gyrase subunit B (NCBI) from Escherichia coli BW25113

Subject, 798 a.a., DNA gyrase, B subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  708 bits (1827), Expect = 0.0
 Identities = 392/808 (48%), Positives = 523/808 (64%), Gaps = 24/808 (2%)

Query: 4   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
           +Y + SI +L+GL AVRKRP MYIG TD   GLHH+V+EVVDN+IDEA+AG+C  I+V +
Sbjct: 8   TYTADSITILEGLAAVRKRPAMYIGSTD-ARGLHHLVYEVVDNSIDEAMAGYCSRIVVKL 66

Query: 64  HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123
           H DNSV+V D+GRGIP  +HP+EG  A EV+MT LHAGGKFD+++YKVSGGLHGVGVS V
Sbjct: 67  HLDNSVTVSDNGRGIPVDLHPKEGKPAVEVVMTKLHAGGKFDNDAYKVSGGLHGVGVSCV 126

Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183
           NALS+ LE+ ++R+GK HR  +  G  Q PL   GE+   GT V F P  E F  V ++ 
Sbjct: 127 NALSEWLEVTVRRDGKRHRMRFARGAVQGPLEFLGESANHGTTVHFKPDEEIFETV-QYS 185

Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243
           YE L KR  ELS+LN G+ I   D+R  +   F  +GGI+ FV+ LN  ++ IHP I   
Sbjct: 186 YETLRKRFEELSYLNKGLEIEFTDERSAETHVFRADGGIRQFVKDLNSGESGIHP-IIDG 244

Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE-GY 302
               DG+ V+ ALQ+N G++EN+  F NNI  ++GGTHLAGF+ A+TR +N Y+  +   
Sbjct: 245 EGVTDGVTVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQPDL 304

Query: 303 SKKAKVSA-TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
            KK K +  +GDD REGL +VVSVK+P P+F  QTK KL +SE+   V   + + L  + 
Sbjct: 305 VKKMKGTVLSGDDVREGLTSVVSVKLPQPQFEGQTKTKLGNSEIAGLVAGIVYDKLNVHF 364

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
            ENP DA++++ K +DAARAR+AARRA+E+ RRKGAL    LPGKLADCQ +DPA SEL+
Sbjct: 365 GENPKDARLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQSKDPAESELF 424

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           +VEGDSAGGSAKQGR+   QAILPL+GKILN E+ RFDKML+++EV  LITA+G GIG D
Sbjct: 425 IVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITAMGAGIGED 484

Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           + + DKLRYH ++IMTDADVDG+HIRTLLLTFF+RQ  E+++RGH+YIAQPPLY+V   +
Sbjct: 485 DTDYDKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQYQELIDRGHLYIAQPPLYRVHSSR 544

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER-- 599
            E++IKDD  ++ + +    +  T+ T  S  A  G  +  L+         +  +E   
Sbjct: 545 FEKFIKDDPELNAFLLERISNDITIRTE-SGCAFTGPDIVSLMKAIELVSAKVRDVENIG 603

Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNL 659
              +  L  + YQ  +     ++E       N L   L D+    S      H + +++ 
Sbjct: 604 IARELFLAFIEYQTRIEPQWFTEEDP-----NGLRQWLGDRGYTVSA----EHEDTDEDS 654

Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLR---GLLEEDAFIERGERRQPV 716
              +V   T+G  T   +  EF     YR+       +R   G L     ++R       
Sbjct: 655 RTFVVFEDTNGHRT--RVGAEFFHSKMYRQAWDALADIRTRCGSLR--CTVDRKGETSDA 710

Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776
                    ++ E+R+G++IQRYKGLGEMNPEQLW TTM+PE+R +LRVTV DA  A + 
Sbjct: 711 EDIFDLFRLVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVDDAEEASEA 770

Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804
           F  LMGD VEPRR FIE NAL   ++DI
Sbjct: 771 FEQLMGDRVEPRREFIERNALSVQDLDI 798