Pairwise Alignments

Query, 804 a.a., DNA gyrase subunit B (NCBI) from Escherichia coli BW25113

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1174 bits (3038), Expect = 0.0
 Identities = 569/803 (70%), Positives = 676/803 (84%), Gaps = 2/803 (0%)

Query: 3   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62
           NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAGHC +I +T
Sbjct: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITIT 63

Query: 63  IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IH D SVSV+DDGRGIP  IH EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 64  IHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182
           VNALS+KL+L I+R+GK+H Q Y HGVP AP+   G+  KTGT +RFWPS +TF+NV EF
Sbjct: 124 VNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSNV-EF 182

Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242
            +EILAKR+RELSFLNSGV IRL D+RD K + F YEGGI AFV+YLN+NKTP++ ++F+
Sbjct: 183 HFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFH 242

Query: 243 FSTEKD-GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301
           F  E+D GI VEVA+QWNDG+QENI+CFTNNIPQRDGGTHLAGFR+A+TR LN YM+ EG
Sbjct: 243 FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEG 302

Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
           Y+KK K +ATGDDAREGL AV+SVKVPDPKFSSQTKDKLVSSEVK+AVEQ M E L +YL
Sbjct: 303 YNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYL 362

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
           LENP DAK++VGKI+DAARAREAAR+AREMTRRKGALDL GLPGKLADCQE+DP LSE+Y
Sbjct: 363 LENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 422

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           +VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           EYNPDK RYH+IIIMTDADVDGSHIRTLLLTFF+RQMPE++ERG+VYIAQPPL+KVKKGK
Sbjct: 483 EYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGK 542

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
           QEQY+KD+ A+ QY  + ALDG +++ +  AP ++GE LE+LV++Y   + ++ R+E+RY
Sbjct: 543 QEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQRY 602

Query: 602 PKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFE 661
           P  +   ++Y P ++   L+DE  +  W++A + EL + E  G  +  +   + E+ ++ 
Sbjct: 603 PTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKVYL 662

Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ 721
           P + +R HG+DT Y   ++F    +Y+RI  LG  L GL+E   +++RG+R + V SF +
Sbjct: 663 PKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSFIE 722

Query: 722 ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781
           ALDW + E++RGL IQRYKGLGEMNPEQLWETTMDPESRRML+VT+ DA+ ADQLFT LM
Sbjct: 723 ALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLM 782

Query: 782 GDAVEPRRAFIEENALKAANIDI 804
           GD VEPRR FIE NAL  AN+D+
Sbjct: 783 GDQVEPRREFIEANALNVANLDV 805