Pairwise Alignments

Query, 804 a.a., DNA gyrase subunit B (NCBI) from Escherichia coli BW25113

Subject, 832 a.a., DNA gyrase subunit B from Herbaspirillum seropedicae SmR1

 Score =  937 bits (2423), Expect = 0.0
 Identities = 482/828 (58%), Positives = 609/828 (73%), Gaps = 37/828 (4%)

Query: 4   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
           SY +SSI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DN+IDEALAG+C EI VTI
Sbjct: 15  SYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCSEIHVTI 74

Query: 64  HADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
           HADNS+S+ D+GRGIPTG+  ++      SAAE++MT LHAGGKFD NSYKVSGGLHGVG
Sbjct: 75  HADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 134

Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMV 167
           VS VNALS+KL+L I+R+GK+H   +  G+ Q            +P+ V GE++K GT V
Sbjct: 135 VSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPIKVIGESDKRGTEV 194

Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
            FW   E FT+V EF YEILAKR+RELSFLN+GV I+L D+R GKE+ F +EGG + FVE
Sbjct: 195 HFWADEEIFTHV-EFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEEDFAFEGGTRGFVE 253

Query: 228 YLNKNKTPIHPNIFYFSTEKDG-----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
           Y+NKNK+ ++P IF  + EK       I V+V++QWND F E + CFTNNIPQRDGGTHL
Sbjct: 254 YINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNIPQRDGGTHL 313

Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
            G RAAMTR +N Y+++   +KKAKV  +GDD REGL  V+SVKVP+PKFSSQTKDKLVS
Sbjct: 314 TGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQTKDKLVS 373

Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
           SEV+  VE+ + + L ++L E P DAKI+ GKI++AARAREAAR+ARE+TRRKG +D  G
Sbjct: 374 SEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTRRKGVMDGLG 433

Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
           L  KLADCQERDPAL ELY+VEGDSAGGSAKQGR+RK QAILPL+GK+LNVEKARF+KML
Sbjct: 434 LSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFEKML 493

Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
           SS+++ TLI  LG  IG DE+NPDKLRYH IIIMTDADVDG+HIRTLLLT FYRQMP +V
Sbjct: 494 SSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQMPALV 553

Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582
           ERGH+YIAQPPLYKVK GK E+Y+KDD    QY + IAL+ A +     APA+ GEAL +
Sbjct: 554 ERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAPAITGEALVE 613

Query: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642
           L  +YN    +I R+ R   ++ L  ++    + + D  ++ T T     L   +ND   
Sbjct: 614 LARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATAT--AEELKKAIND--- 668

Query: 643 HGSQWKFDVHTNAEQNLFEPIVRV--RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 700
                  DV    +++  +  + +  R HG      +D +F++G +Y+ + T  E  +GL
Sbjct: 669 ----INIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAETFKGL 724

Query: 701 LEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMD 756
           + + A + RG+    +   +  F QA+ WL  E+ RG++ QRYKGLGEMNPEQLWETTMD
Sbjct: 725 IRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMD 784

Query: 757 PESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
           P  RR+L+V ++DAIAADQ+F TLMGD VEPRRAFIE NAL+A NID+
Sbjct: 785 PTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832