Pairwise Alignments

Query, 804 a.a., DNA gyrase subunit B (NCBI) from Escherichia coli BW25113

Subject, 653 a.a., DNA gyrase subunit B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  598 bits (1543), Expect = e-175
 Identities = 311/565 (55%), Positives = 405/565 (71%), Gaps = 13/565 (2%)

Query: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61
           + SY + SI+VL+GL+AVRKRP MYIGD     GLHH+V+E+VDN+IDEALAG+C  I V
Sbjct: 10  NGSYSADSIQVLEGLEAVRKRPAMYIGDISI-KGLHHLVYEIVDNSIDEALAGYCDHIEV 68

Query: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
           TI+ DNS++VQD+GRGIP   H +E  SA EV MTVLHAGGKFD  SYKVSGGLHGVG+S
Sbjct: 69  TINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMS 128

Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181
            VNALS  +   + R GKI++Q YE G P   +   G ++ TGT  +FWP    FT  T 
Sbjct: 129 CVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVGVSDITGTRQQFWPDDTIFTE-TV 187

Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR-----DG--KEDHFHYEGGIKAFVEYLNKNKT 234
           ++Y+ILA RLREL++LN+G+ I L D+R     DG  K + F+ E G++ FV ++  ++ 
Sbjct: 188 YDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSRE 247

Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294
            +  ++ Y ++EK GI +E+A+ +N GF EN++ + NNI   +GGTHLAGFR A+TRTL 
Sbjct: 248 HLINDVIYLNSEKQGIPIEIAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRTLK 307

Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354
            Y +     +K KV  +GDD REGL AV+SVKV +P+F  QTK KL ++EV  AV+Q + 
Sbjct: 308 KYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVG 367

Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414
           E+LA YL E+P +AK +V K+I AA AR AAR+AREM +RK  +   GLPGKLADC ++D
Sbjct: 368 EVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKD 427

Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474
           P+  EL+LVEGDSAGG+AKQGRNR  QAILPL+GKILNVEKA + K L S E+  + TAL
Sbjct: 428 PSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTAL 487

Query: 475 GCGIGRD----EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530
           G  IG +    E N +KLRYH IIIMTDADVDGSHI TL++TFF+R MP+I++ G++YIA
Sbjct: 488 GVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLYIA 547

Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQY 555
            PPLY  KKGK E+Y   D    ++
Sbjct: 548 TPPLYLCKKGKVEEYCWTDAQRQKF 572



 Score = 85.5 bits (210), Expect = 9e-21
 Identities = 42/67 (62%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796
           QRYKGLGEMN +QLWETTMDP++R + +V + +A  AD +F+ LMG+ V PRR FIEENA
Sbjct: 587 QRYKGLGEMNAQQLWETTMDPDNRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 646

Query: 797 LKAANID 803
              ANID
Sbjct: 647 -TYANID 652