Pairwise Alignments

Query, 355 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

Subject, 443 a.a., O-antigen membrane transport protein from Caulobacter crescentus NA1000

 Score =  149 bits (376), Expect = 1e-40
 Identities = 92/337 (27%), Positives = 163/337 (48%), Gaps = 3/337 (0%)

Query: 11  ADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQSYAKSISDFIK 70
           A    + ++ N+  L S  VV+A++GL  ++   + +   M GVLVI+ ++A+ + +   
Sbjct: 5   APSPLKKVLANAGQLLSGRVVNAIIGLAYIALTARSLGAEMMGVLVIINAFAQFLGEVAH 64

Query: 71  FQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLPFLSHSLGLDD 130
           FQ+WQ ++ YG   L  N+ ++F+ V+ F+  LD++S  + I+ G+    F    L   +
Sbjct: 65  FQSWQTLITYGAGPLLENDKRRFQQVLRFTLLLDLISAVLGILLGMLGAWFFWRQLSWPE 124

Query: 131 QSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSVVAWYFDFGFA 190
                 ALY   I  M S++  G+LR  DRF  +A +QA   F+R  G  +         
Sbjct: 125 GMNGYGALYALSIGVMTSASGVGLLRLFDRFRFLAAEQAISSFVRLVGCAICAVTQAPIQ 184

Query: 191 GFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWSFVWSTNIAHS 250
            F++AW              A  +L+R+ + + F + +  +++ + G W F  +TN + +
Sbjct: 185 YFLLAWAAGTFAAFFYIAAIAIWDLKRKGLLSGFTV-MGPTSKDLPGVWRFAMATNFSGT 243

Query: 251 IWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEV--MRLDPRTT 308
           +        T+ VG +LGPA A L++I     D    PA L+  + YPE+  MR      
Sbjct: 244 LDVGFTHVLTMAVGALLGPAQAALWRIGKQVADGMAKPARLMVPALYPELAKMRASGGQQ 303

Query: 309 RPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFG 345
               L V+  L+ G    ++ L  L+ G+ ++  V G
Sbjct: 304 AMTKLAVQIALIGGAAAGVLLLVSLVSGRWILETVMG 340