Pairwise Alignments

Query, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

Subject, 455 a.a., DNA repair protein RadA (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  376 bits (966), Expect = e-109
 Identities = 205/437 (46%), Positives = 282/437 (64%), Gaps = 13/437 (2%)

Query: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITE-VRLAASPMVARNERLSGYAGSAG 59
           MAK P   F+C ECGA + +W G+C  C AWN+I+E V L+A P     + L G  G   
Sbjct: 1   MAK-PATRFICAECGAAHSKWSGRCDGCGAWNSISEEVPLSAGPS---KKSLGGIRG--- 53

Query: 60  VAKVQKLSDISLEELP--RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLC 117
             K   L D++ E+ P  R ++  +E DRVLGGG+V  SA+L+GG+PG GKSTLLLQ   
Sbjct: 54  --KKVPLGDLASEDAPPPRRTSQLEELDRVLGGGLVDASAVLVGGDPGIGKSTLLLQAAA 111

Query: 118 KLAQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVI 176
             A+   K +Y++GEE+  QV MRA RLGL    + + +ET++  I    E E P L ++
Sbjct: 112 SFARAGAKAVYISGEEATSQVRMRARRLGLADAAVKLGAETNLRDILTTLEAEAPDLAIL 171

Query: 177 DSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHC 236
           DSIQ +    V S+PGSVAQVR  A  L  FAK  G ++++VGHVTK+G +AGP+V+EH 
Sbjct: 172 DSIQTLWSDTVDSAPGSVAQVRACAHELVTFAKRSGTSVILVGHVTKEGQIAGPRVVEHM 231

Query: 237 IDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTS 296
           +D  +  +G+   +FR LRS KNRFG  +E+GVF MT  GL EV+NPSA+FLS  D    
Sbjct: 232 VDTVLYFEGERGHQFRILRSVKNRFGPADEIGVFEMTGAGLAEVANPSALFLSGRDAPAP 291

Query: 297 GSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQ 356
           GS V    EGTRP+L E+QALV  S +AN RR  VG +  RL+++LAVL    G+     
Sbjct: 292 GSVVFAGIEGTRPVLCELQALVAPSALANARRTVVGWDSGRLSMILAVLEARCGIPFTGL 351

Query: 357 DVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERI 416
           DV++NV GG+++ E +ADLA+  A++S+  D  LP ++VVFGE+ L+G +RPV   + R+
Sbjct: 352 DVYLNVAGGLRIGEPAADLAVATALLSAREDIALPAEMVVFGEISLSGALRPVGQTENRL 411

Query: 417 SEAAKHGFRRAIVPAAN 433
            EAAK GF +A+ PA +
Sbjct: 412 KEAAKLGFTKALAPAGS 428