Pairwise Alignments

Query, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

Subject, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  365 bits (936), Expect = e-105
 Identities = 191/434 (44%), Positives = 284/434 (65%), Gaps = 6/434 (1%)

Query: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60
           MAK  K  +VC+ CG + P+W G+C +C  WNT  E  +           +SG       
Sbjct: 1   MAKE-KTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKE--TTNRRPVSGIETQK-- 55

Query: 61  AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120
           AK   LS+I  ++ PR +    E +RVLGGG+VPGS +LIGG PG GKSTL++QT+ ++ 
Sbjct: 56  AKPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP 115

Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180
            + K LYV+GEES +Q+ +RA RL   + +  ++ ETS+EQI +  +   P L++IDSIQ
Sbjct: 116 DK-KILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQ 174

Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240
            +   +++SSPGS+AQVRE +A + RFAK     ++++GH+ K+GS+AGPKVLEH +D  
Sbjct: 175 TISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTV 234

Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300
           +  +GD    +R LRS KNRFG+  ELG++ M + GLR+VSNPS + LS+  E  SG ++
Sbjct: 235 LQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAI 294

Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360
               EG RP L+E QALV  ++  NP+R A G +  R+ +LLAVL +  G ++A +DVF+
Sbjct: 295 ASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFL 354

Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420
           N+ GG+KV + + DLA++ A++SS  D  +  ++ + GE+GL+GEIRPV   ++RI EA 
Sbjct: 355 NIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAE 414

Query: 421 KHGFRRAIVPAANV 434
           K GF+R ++P  N+
Sbjct: 415 KLGFKRFLLPKYNL 428