Pairwise Alignments

Query, 201 a.a., periplasmic protein (NCBI) from Escherichia coli BW25113

Subject, 109 a.a., transporter from Herbaspirillum seropedicae SmR1

 Score = 70.1 bits (170), Expect = 1e-17
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 18/124 (14%)

Query: 1   MTMTRLKISKTLLAVMLTSAVAT--GSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSA 58
           M++T++ ++K  +   L   + +  G A   N   T                G ++DD+ 
Sbjct: 1   MSLTKMSLTKRFIGFFLALFMVSLVGCASGPNKEGT----------------GEYVDDAV 44

Query: 59  ITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDK 118
           IT KVKAA+ +  ++KST+I+V+T + VV LSGFV S   A  A ++A+GV+GV SV + 
Sbjct: 45  ITTKVKAAIFNEKDLKSTEINVETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRND 104

Query: 119 LHVR 122
           L ++
Sbjct: 105 LRLK 108



 Score = 59.7 bits (143), Expect = 2e-14
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 125 KEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESI 184
           KEG+ + Y  D   T+++KA +  +  + S  + VET  GVVQLSG V S   + RA  +
Sbjct: 33  KEGTGE-YVDDAVITTKVKAAIFNEKDLKSTEINVETYKGVVQLSGFVSSSTAAARATEL 91

Query: 185 AKAVDGVKSVKNDLKTK 201
           A+ V GV SV+NDL+ K
Sbjct: 92  ARGVKGVVSVRNDLRLK 108