Pairwise Alignments

Query, 304 a.a., methylated adenine and cytosine restriction protein (NCBI) from Escherichia coli BW25113

Subject, 306 a.a., restriction endonuclease from Herbaspirillum seropedicae SmR1

 Score =  216 bits (550), Expect = 5e-61
 Identities = 128/313 (40%), Positives = 188/313 (60%), Gaps = 18/313 (5%)

Query: 1   MTVPTYDKFIEPVLRYLATKPEGAAARDVHEAAADALGLDDSQRAKVITSGQL-VYKNRA 59
           MT+P Y   + P+LR      E    RD+ E  AD   L D+QRA+++ SG   ++ NRA
Sbjct: 1   MTIPDYQSIMLPLLRLTGDTKEHRF-RDLVEQLADEFSLTDAQRAEMLPSGTAPLFDNRA 59

Query: 60  GWAHDRLKRAGLSQSLSRGKWCLTPAGFDWVASHPQPM-TEQETNHLAFAFVNVKLKSRP 118
           GWA   LK+AGL QS  RG   +T  G D ++  P  +  E    +  F    V+ +++ 
Sbjct: 60  GWARTYLKQAGLLQSAKRGVLQITERGSDLLSKPPVKIDVEFLRRYQEFREFQVRRRTK- 118

Query: 119 DAVDLDPKADSPDHEELAKSS----PDDRLDQALKELRDAVADEVLENLLQVSPSRFEVI 174
                  + D+PD      +S    P+D L  A + LR  +  E+L+ +  +SP+ FE +
Sbjct: 119 -------EVDTPDAPNATVASTDQTPEDALAAAYQTLRSNLEAELLDQVRSMSPAFFERL 171

Query: 175 VLDVLHRLGYGGHRDDL-QRVGGTGDGGIDGVISLDKLGLEKVYVQAKRWQNTVGRPELQ 233
           V+D+L  +GYGG R D    VG +GDGGIDG+I  D+LGL+ +YVQAKRW+ TVGRPE+Q
Sbjct: 172 VIDLLVSMGYGGSRQDAASAVGKSGDGGIDGIIKEDRLGLDVIYVQAKRWEGTVGRPEIQ 231

Query: 234 AFYGALAGQKAKRGVFITTSGFTSQARDFAQSVEG-MVLVDGERLVHLMIENEVGVSS-R 291
            F GAL GQ+A +GVFITTS F+S+A ++   +   ++L+DG +L  LM+++ VGV+   
Sbjct: 232 KFAGALQGQRANKGVFITTSSFSSEAEEYTNIISSKIILLDGRQLAKLMVDHNVGVAQVG 291

Query: 292 LLKVPKLDMDYFE 304
           L ++ K+D DYFE
Sbjct: 292 LYEIKKIDSDYFE 304