Pairwise Alignments

Query, 300 a.a., minor component of type 1 fimbriae (NCBI) from Escherichia coli BW25113

Subject, 336 a.a., F1C fimbrial protein subunit FocH from Escherichia coli Nissle 1917

 Score =  171 bits (433), Expect = 2e-47
 Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 15/301 (4%)

Query: 12  LMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPVVNVGQNL-VVDLSTQIFCHN-DY 69
           +M +S  +++  C+  N T      G +   + L+P V   + + V+DL+  + C N D 
Sbjct: 37  IMAYSQPSFALLCRN-NQTGQTFQSGDSRFNITLSPTVQYDKAITVLDLNQLVLCQNEDA 95

Query: 70  PETITDYVTLQRGSAYGGVLS-----NFSGTVKYSGSSYPFPTTSETP--RVVYNSRTDK 122
                DY+ +++G+ +   L          T + SG S   P   +T      +     K
Sbjct: 96  SGQNYDYLRVRQGTGFSPSLDAKTYGRLDFTNRLSGYSQTLPLQQDTKPTEAYWQYGVWK 155

Query: 123 PWPVALYLTPVSSAGGVAIKAGSLIAVLILRQ--TNNYNSDDFQFVWNIYANNDVVVPTG 180
           P+P  +YL P     G  I AG L+A + + +  T    + +  F W  YA NDV + TG
Sbjct: 156 PFPAKMYLYPEPGVFGKLIHAGELVATVYVNKFSTMGQEAGERNFTWRFYATNDVYIQTG 215

Query: 181 GCDVSARDVTVTLPDYPGS-VPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPA 239
            C VS+ +V V LP YPG  V +PLTV C ++Q++ Y LSG+   +GN++F NTA+ S A
Sbjct: 216 TCRVSSNNVKVDLPSYPGGPVTVPLTVRCDQTQSVSYTLSGSVTGSGNTVFANTAT-SGA 274

Query: 240 QGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTG-GQVTAGNVQSIIGVTFV 298
            GVGVQL+ N  ++PA    SLG VG+S VSLGL A+YA TG    T G VQS+I VTF 
Sbjct: 275 GGVGVQLSDNAGLVPAGQPRSLGQVGSSPVSLGLKASYALTGQASPTPGAVQSVINVTFS 334

Query: 299 Y 299
           Y
Sbjct: 335 Y 335