Pairwise Alignments

Query, 331 a.a., putative transport system permease protein (VIMSS) from Escherichia coli BW25113

Subject, 345 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Acidovorax sp. GW101-3H11

 Score =  320 bits (821), Expect = 2e-92
 Identities = 171/309 (55%), Positives = 219/309 (70%), Gaps = 4/309 (1%)

Query: 6   LPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSV 65
           LPL  TI +FV         + GF S +V  N+L DNAFL I+AVGMTFVILSGGIDLSV
Sbjct: 32  LPLAATISLFVAMATLGSVLYTGFFSAQVFLNLLIDNAFLIIVAVGMTFVILSGGIDLSV 91

Query: 66  GSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMF 125
           GSV+A T + LA ++   G +P++A PLVL+MG AFGAFMG LI+  ++  FI+TLAGMF
Sbjct: 92  GSVVALTTMVLAALVEHRGWNPMVAIPLVLLMGTAFGAFMGFLIERFRLQPFIVTLAGMF 151

Query: 126 FLRGVSYLVSEESIPINHPIYDTLSSLAWKIP--GGGRLSAMGLLMLAVVVIGIFLAHRT 183
             RG+ YL+S +SI I H  Y  L+   W++P   G  LS   L+ +AV+++ +F+AH T
Sbjct: 152 LARGLCYLISIDSISITHEGYSELAQ--WRLPLWEGASLSLGALIAIAVLLVALFVAHCT 209

Query: 184 RFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGV 243
            FG  VYA+GG+  SA LMG+  R T I +Y LS   + LAG+VF+ Y  +GY L  VG+
Sbjct: 210 PFGRSVYAVGGSEHSAVLMGLPVRRTLIGVYTLSGFCSALAGVVFTFYMLSGYGLHAVGM 269

Query: 244 ELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
           ELDAIA+VVIGGTLL+GGVG V GTLFGV + G+IQT I+FDGTLSSWWT+I +G+LLF 
Sbjct: 270 ELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIVVGVLLFA 329

Query: 304 FIALQRGLT 312
           F  LQR L+
Sbjct: 330 FCLLQRLLS 338