Pairwise Alignments

Query, 447 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

Subject, 347 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  112 bits (281), Expect = 1e-29
 Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 25/342 (7%)

Query: 1   MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTV 60
           ML+  +  L ++  SA  S SE +L +   I+++ LA+     A  +L ++E        
Sbjct: 1   MLSLAIATLVVLLGSAICSASEAALLSLPLIRVRQLAESRRPAALALLAIKEQISRPLAA 60

Query: 61  VQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLT 120
           + +  N   ILG I+  +  +    S +    SA L             T + ILF ++ 
Sbjct: 61  LVVLNNLFNILGSIIIGSLAAQVLQSAWIGIFSAVL-------------TLLIILFGEIV 107

Query: 121 PKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVR-KDDITSDD 179
           PK +G    + +AL    P+R+   +  P++W        +   F  P       +T+D+
Sbjct: 108 PKTLGTRFAQTLALVSAQPLRWLTRLLLPIIW--------LLEHFTAPFNEGSPQLTTDE 159

Query: 180 --IYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNK 237
             I  +   G   G + + E E+I+ VF+L        MTPR  + +    +  +++K +
Sbjct: 160 QEIQLLASIGHQEGAIEQDELEMIQRVFQLNDLNASDVMTPRVAITYLWGEDQLETVKAE 219

Query: 238 VAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSE 297
           +    HS+ ++ ++ ID + G     +LL  +LA Q   L S +  R    VP+T+   +
Sbjct: 220 ILASQHSRIVIVDDSIDAVCGIALKTELLAALLAGQGDLLLSAL-ARPAHFVPETVRADK 278

Query: 298 ALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQ 339
            L++F+   E   ++++EY  V G++TL DV+  L G++V +
Sbjct: 279 LLKTFQKVREHLFIVLDEYGGVAGVVTLEDVLEVLTGEIVDE 320