Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 950 a.a., excinuclease ABC subunit A from Azospirillum brasilense Sp245

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 577/941 (61%), Positives = 731/941 (77%), Gaps = 9/941 (0%)

Query: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I VRGAR HNLKN+++ +PRD+LIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   ISVRGAREHNLKNVDVDLPRDELIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
           FL LM+KPDVD IEGLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P  P  
Sbjct: 65  FLELMQKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGIPYSPAT 124

Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
            +P+ +QTVSQMVD +L+ PEG RL+LLAPII+ RKGE+ K +++L  +G+ R R+DG +
Sbjct: 125 GLPIESQTVSQMVDRILAMPEGTRLLLLAPIIRGRKGEYKKEIQDLRKRGFQRVRVDGTM 184

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAE 243
            ++ + P L  + KH I+VVVDR  VR+ L  RLA+S ETAL L+ G   V + D    E
Sbjct: 185 HEIDEVPALNKKLKHDIDVVVDRIVVREGLGNRLADSLETALGLADGIIFVENADSH--E 242

Query: 244 ELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLA 303
           + +FS  FACP+ G+++ E+EPRLFSFNNP GACP CDGLG + YFDP  V+ +  LSL 
Sbjct: 243 QTVFSQKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGSKIYFDPMLVVPDERLSLK 302

Query: 304 GGAIRGW-DRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMN 362
            GAI  W    + YY Q L+S+A H+   ++ PW  L   V + +LYGS    I   Y  
Sbjct: 303 KGAIAPWAGSSSQYYVQTLESIAQHFGVAMDTPWEKLPEKVRQTILYGSDGAPITMTY-- 360

Query: 363 DRGDTSIRRHP-FEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHV 421
           D G  S + +  FEG+++N+ERRY+ETES+ +REEL+K+ S++PC +C+G RL+ EA  V
Sbjct: 361 DDGLRSYQTNKAFEGIVNNLERRYRETESAYMREELSKYQSSQPCETCKGARLKPEALAV 420

Query: 422 YVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKEIGDRLKFLVNVGLNYLT 479
            V    +   ++MSI  A  +F+ L   L  +  +IA +ILKEI +RL FL  VGL YLT
Sbjct: 421 KVHGQHISQAAEMSIADAATWFSTLNDHLRPKDKEIAYRILKEINERLGFLNAVGLEYLT 480

Query: 480 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGN 539
           LSR + +LSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL  LRDLGN
Sbjct: 481 LSRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLKRLRDLGN 540

Query: 540 TVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIE 599
           TVIVVEHDEDAIR AD+++D+GPGAG HGG V+A+G    + A P+S+T Q+++G R + 
Sbjct: 541 TVIVVEHDEDAIRTADYLVDMGPGAGQHGGTVIAQGTPAEVQANPDSVTAQFLNGTRFVP 600

Query: 600 VPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQ 659
           VP +R P +  + L++ GAR NNL++V+  +P+G FTC+TGVSG GKSTLI +TL+    
Sbjct: 601 VPDQRRPGHKGQFLEVKGARANNLQNVSARIPMGTFTCVTGVSGGGKSTLIIETLYKAVA 660

Query: 660 RQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVP 719
           R+L GA    PA + ++ GLEH DKVIDI+QSPIGRTPRSNPATYTG FTP+R+ FAG+P
Sbjct: 661 RKLMGAR-EHPAEHDELLGLEHLDKVIDINQSPIGRTPRSNPATYTGAFTPIRDWFAGLP 719

Query: 720 ESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIK 779
           E++ARGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV CD C GKRYNRETLE+ 
Sbjct: 720 EAKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLEVT 779

Query: 780 YKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVK 839
           Y+ KTI +VLDMT+EE +EFF AVP +  K++TL  VGL YI +GQ ATTLSGGEAQRVK
Sbjct: 780 YRDKTIADVLDMTVEEGKEFFKAVPGIRDKMETLERVGLGYIHIGQPATTLSGGEAQRVK 839

Query: 840 LARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTAD 899
           L++ELS+R TG+TLYILDEPTTGLHFAD+++L++VLH L DQGNT++VIEHNL+VIKTAD
Sbjct: 840 LSKELSRRATGRTLYILDEPTTGLHFADVEKLMEVLHALVDQGNTVLVIEHNLEVIKTAD 899

Query: 900 WIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           WI+DLGPEGG+GGGEI+  GTPE VA+ + S+T ++L P L
Sbjct: 900 WIIDLGPEGGTGGGEIVAEGTPEDVAKVKRSYTGQYLAPYL 940



 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 23/215 (10%)

Query: 611 KVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIA-- 668
           K + + GAR +NLK+V + LP      ITG+SGSGKS+L  DT++   QR+   +  A  
Sbjct: 3   KHISVRGAREHNLKNVDVDLPRDELIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 62

Query: 669 ----EPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA--GVPESR 722
               E     D+  +E     I I+Q    + PRS   T T ++  +R L+A  G+P S 
Sbjct: 63  RQFLELMQKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGIPYSP 122

Query: 723 ARGYTPGRFSFNVRGGRCEAC-QGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYK 781
           A G      + +    R  A  +G  ++         +  P  + +   Y +E  +++ +
Sbjct: 123 ATGLPIESQTVSQMVDRILAMPEGTRLL---------LLAPIIRGRKGEYKKEIQDLRKR 173

Query: 782 GKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDV 816
           G     V D T+ E     D VPAL +KL+  +DV
Sbjct: 174 GFQRVRV-DGTMHE----IDEVPALNKKLKHDIDV 203