Pairwise Alignments
Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113
Subject, 973 a.a., excinuclease ABC subunit A from Sinorhizobium meliloti 1021
Score = 1114 bits (2881), Expect = 0.0
Identities = 568/958 (59%), Positives = 719/958 (75%), Gaps = 24/958 (2%)
Query: 4 IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 7 ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DYLRLLFARVG P P
Sbjct: 67 FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVGVPYSPAT 126
Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
+P+ +QTVSQMVD VL EG RL +LAP+++ RKGE+ K L L +G+ R ++DG+
Sbjct: 127 GLPIESQTVSQMVDRVLEFGEGTRLYMLAPLVRGRKGEYRKELAELMKKGFQRVKVDGQF 186
Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKA- 242
+++D P L+ + KH I+VVVDR VR D+ RLA+S ET L L+ G A+ D P
Sbjct: 187 YEIADVPALDKKYKHDIDVVVDRVVVRPDIGTRLADSIETCLTLADGLAIAEFADRPLPP 246
Query: 243 -----------------EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGV 285
E +LFS FACP+ G+++ E+EPRLFSFNNP GAC TCDGLG
Sbjct: 247 EETSAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACTTCDGLGS 306
Query: 286 QQYFDPDRVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLADHYKFDVEAPWGSLSANVH 344
QQ D ++ P +L GAI W + YY Q L++L + F + + W LS
Sbjct: 307 QQKIDEALIVPEPNRTLRDGAIAPWAKSTSPYYNQTLEALGTVFGFKLGSRWSELSEEAQ 366
Query: 345 KVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNR 404
+ +L+G+ K+ I F Y + + + FEG++ N+ERR+KET+S+ REE+ +++S
Sbjct: 367 EAILHGT-KDKITFHYQDGARSYNTTK-TFEGIVPNLERRWKETDSAWAREEIERYMSAA 424
Query: 405 PCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKE 462
PC +C G RL+ EA V + + +S+MSI A ++F L L+ ++ +IA +ILKE
Sbjct: 425 PCPACAGYRLKPEALAVKIHALHIGEVSEMSIRAARDWFEVLPEHLSTKQNEIAVRILKE 484
Query: 463 IGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 522
I +RL+FL +VGL YL+LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQR
Sbjct: 485 IRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 544
Query: 523 DNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMA 582
DN RLL TL HLRD+GNTVIVVEHDEDAI AD+V+DIGP AG+HGGEV+AEG IM+
Sbjct: 545 DNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGEVIAEGTPSDIMS 604
Query: 583 VPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVS 642
P+SLTG+Y+SG+ + VP +R +K + + GAR NNLK+VT ++P+G+FT +TGVS
Sbjct: 605 NPKSLTGKYLSGELSVAVPGERRKPKKKKEVTVVGARANNLKNVTASIPLGVFTAVTGVS 664
Query: 643 GSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPA 702
G GKST + +TL+ A R++ GA PA + I G EH DKVIDIDQSPIGRTPRSNPA
Sbjct: 665 GGGKSTFLIETLYKAAARRVMGAR-ENPAEHDRIDGFEHIDKVIDIDQSPIGRTPRSNPA 723
Query: 703 TYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVP 762
TYTG FTP+R+ FAG+PE++ARGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV
Sbjct: 724 TYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 783
Query: 763 CDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIR 822
CD C GKRYNRETL++ +KGK+I +VLDMT+EE EFF AVPA+ KL TL VGL YI+
Sbjct: 784 CDVCHGKRYNRETLDVHFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLVTLNQVGLGYIK 843
Query: 823 LGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQG 882
+GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+ +LL+VLH+L +QG
Sbjct: 844 IGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEVLHELVNQG 903
Query: 883 NTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
N++VVIEHNL+VIKTADWI+D GPEGG GGGE++ GTPE V + S+T +FLK +L
Sbjct: 904 NSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAQGTPEEVVKEPRSYTGQFLKELL 961
Score = 133 bits (335), Expect = 5e-35
Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 15/203 (7%)
Query: 406 CASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGD 465
C C G R RE V+ + + + DM++ +EFF + + D
Sbjct: 784 CDVCHGKRYNRETLDVHFKGKSIADVLDMTVEEGVEFF--------------AAVPAVRD 829
Query: 466 RLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRDN 524
+L L VGL Y+ + + A TLSGGEAQR++LA ++ G +Y+LDEP+ GLH D
Sbjct: 830 KLVTLNQVGLGYIKIGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDV 889
Query: 525 ERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVP 584
+LL L L + GN+V+V+EH+ + I+ AD +ID GP G GGEV+A+G E ++ P
Sbjct: 890 AKLLEVLHELVNQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAQGTPEEVVKEP 949
Query: 585 ESLTGQYMSGKRKIEVPKKRVPA 607
S TGQ++ + KK V A
Sbjct: 950 RSYTGQFLKELLERRPVKKVVAA 972
Score = 68.6 bits (166), Expect = 2e-15
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 611 KVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIA-- 668
K + + GAR +NLK + L LP +TG+SGSGKS+L DT++ QR+ + A
Sbjct: 5 KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64
Query: 669 ----EPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA--GVPESR 722
E D+ ++ I I+Q R PRS T T ++ +R LFA GVP S
Sbjct: 65 RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVGVPYSP 124
Query: 723 ARG 725
A G
Sbjct: 125 ATG 127
Score = 60.1 bits (144), Expect = 7e-13
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 3 KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
++ V GAR +NLKN+ IP VTG+SG GKS+ +TLY RR + + A
Sbjct: 634 EVTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAAARRVMGARENPA- 692
Query: 63 QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPR 119
E +D E + I I+Q PRS T T +R FA + E +
Sbjct: 693 ------EHDRIDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743