Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 972 a.a., Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA from Mycobacterium tuberculosis H37Rv

 Score = 1052 bits (2721), Expect = 0.0
 Identities = 533/950 (56%), Positives = 688/950 (72%), Gaps = 18/950 (1%)

Query: 2   DKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D++ V+GAR HNL++++L +PRD LIV TGLSGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 3   DRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYA 62

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
           RQFL  M+KPDVD IEGLSPA+SI+QKST+ NPRSTVGTITE++DYLRLL+AR G P CP
Sbjct: 63  RQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCP 122

Query: 122 DHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDG 181
                +A QT  Q+VD VL+ PEG R ++LAP+++ RKGE     + L +QGY R R+DG
Sbjct: 123 TCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRKGEFADLFDKLNAQGYSRVRVDG 182

Query: 182 EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPK 241
            V  L+DPPKL+ Q+KH IEVVVDR  V+    +RL +S ETAL L+ G  V+  +D   
Sbjct: 183 VVHPLTDPPKLKKQEKHDIEVVVDRLTVKAAAKRRLTDSVETALNLADGIVVLEFVDHEL 242

Query: 242 A---EELLFSANFACPICGYSMR--ELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQ 296
                E  FS   ACP  G+++   +LEPR FSFN+P GACP C GLG+++  DP+ V+ 
Sbjct: 243 GAPHREQRFSEKLACPN-GHALAVDDLEPRSFSFNSPYGACPECSGLGIRKEVDPELVVP 301

Query: 297 NPELSLAGGAIRGWDRRNF--YYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKE 354
           +P+ +LA GA+  W   +   Y+ +M+  L +   FDV+ PW  L A   K +L G+  E
Sbjct: 302 DPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEALGFDVDTPWRKLPAKARKAILEGAD-E 360

Query: 355 NIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRL 414
            +  +Y N  G T      FEGVL  ++R+  +TES  ++E    F+ + PC  C GTRL
Sbjct: 361 QVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPCPVCAGTRL 420

Query: 415 RREARHVYVENTP--------LPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDR 466
           + E   V +            +  + ++SI    +F N L L  +   IA ++LKEI  R
Sbjct: 421 KPEILAVTLAGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR 480

Query: 467 LKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNER 526
           L FL++VGL YL+LSR+A TLSGGEAQRIRLA+QIG+GLVGV+YVLDEPSIGLHQRDN R
Sbjct: 481 LGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRR 540

Query: 527 LLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPES 586
           L+ TL  LRDLGNT+IVVEHDED I  AD ++DIGPGAG HGG +V  GP + ++   +S
Sbjct: 541 LIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDS 600

Query: 587 LTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGK 646
           +TG Y+SG+  IE+P  R   +P + L + GAR +NL+ + ++ P+G+ T +TGVSGSGK
Sbjct: 601 ITGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGK 660

Query: 647 STLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTG 706
           STL+ND L  +   +LNGA    P  +  + GL++ DK++ +DQSPIGRTPRSNPATYTG
Sbjct: 661 STLVNDILAAVLANRLNGARQV-PGRHTRVTGLDYLDKLVRVDQSPIGRTPRSNPATYTG 719

Query: 707 VFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQC 766
           VF  +R LFA   E++ RGY PGRFSFNV+GGRCEAC GDG IK+EM+FLPD+YVPC+ C
Sbjct: 720 VFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 779

Query: 767 KGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQS 826
           +G RYNRETLE+ YKGKT+ EVLDM+IEEA EFF+ +  + R L+TL+DVGL Y+RLGQ 
Sbjct: 780 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQP 839

Query: 827 ATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIV 886
           A TLSGGEAQRVKLA EL KR TG+T+YILDEPTTGLHF DI++LL+V++ L D+GNT++
Sbjct: 840 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 899

Query: 887 VIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFL 936
           VIEHNLDVIKT+DWI+DLGPEGG+GGG ++  GTPE VA   AS+T +FL
Sbjct: 900 VIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL 949



 Score =  145 bits (366), Expect = 1e-38
 Identities = 82/190 (43%), Positives = 114/190 (60%), Gaps = 15/190 (7%)

Query: 405 PCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIG 464
           PC  C+G R  RE   V+ +   +  + DMSI  A EFF    +AG            + 
Sbjct: 775 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE--PIAG------------VH 820

Query: 465 DRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 523
             L+ LV+VGL Y+ L + A TLSGGEAQR++LAS++     G  +Y+LDEP+ GLH  D
Sbjct: 821 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD 880

Query: 524 NERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAV 583
             +LL  +  L D GNTVIV+EH+ D I+ +D +ID+GP  G  GG VVA+G  E + AV
Sbjct: 881 IRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 940

Query: 584 PESLTGQYMS 593
           P S TG++++
Sbjct: 941 PASYTGKFLA 950