Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1160 bits (3002), Expect = 0.0
 Identities = 584/944 (61%), Positives = 729/944 (77%), Gaps = 7/944 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           + KIEVRGAR HNLK+I++ IPRD+L+V+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFL +M+KPDVDHI GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLLFARVG P  
Sbjct: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           P   +P+ AQ V  MVD V++  EG R  LLAPII++RKGE+ K    L  QG+ R ++D
Sbjct: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVD 183

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMD-D 239
           G   DL  PP L+ + +H I+VVVDR  V++ +  RLA+SF TAL+L+ G A++     +
Sbjct: 184 GAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPTE 243

Query: 240 PKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPE 299
            + E   FS  FACP+ G+++ E+EPRLFSFN P GACP CDGLGV+ +FD   V+ +  
Sbjct: 244 GEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLVVPDAT 303

Query: 300 LSLAGGAIRGWDR-RNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEF 358
           L+LA GA+  W + ++ Y+ Q + ++A HY+FD + PW +L   V +V L GSG+E I F
Sbjct: 304 LTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGEEEITF 363

Query: 359 KYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREA 418
           +Y ++ G        FEGV+ NMERRY+ET+SS +REE  ++ +NR C +C G RLR EA
Sbjct: 364 RY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGYRLRPEA 422

Query: 419 RHVYVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKEIGDRLKFLVNVGLN 476
             V +    +  +  MSI  A ++   +   L+ Q+ +IA  ILKEI +RL FL NVGL 
Sbjct: 423 LAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFLNNVGLE 482

Query: 477 YLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRD 536
           YLTLSR+A TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL +LRD
Sbjct: 483 YLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRD 542

Query: 537 LGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKR 596
            GNTVIVVEHDE+A+R AD+V DIGPGAGVHGG+VVA G    IMA P S+TG Y++G+R
Sbjct: 543 QGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGDYLAGRR 602

Query: 597 KIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFP 656
           +I VP  R   N +KV  +  A GNNL+D+T+  P+G F C+TGVSG GKSTL  +TLF 
Sbjct: 603 EIPVPATRRKGNKKKVT-VRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFK 661

Query: 657 IAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA 716
            A  +LNGA    PAP   I+GLEH DKVIDIDQ PIGRTPRSNPATYTG FTP+R+ FA
Sbjct: 662 TASMRLNGAR-QTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFA 720

Query: 717 GVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETL 776
           G+PE+R RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV C+ CKGKRYNRETL
Sbjct: 721 GLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKRYNRETL 780

Query: 777 EIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQ 836
           E+ +KGK+I +VLDMT+E+A+EFF AVP++  K+  LM VGL YI++GQ ATTLSGGEAQ
Sbjct: 781 EVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQ 840

Query: 837 RVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIK 896
           RVKL++EL+KR TG+TLYILDEPTTGLHF D+++LL+VLH+L +QGNT+VVIEHNLDVIK
Sbjct: 841 RVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEHNLDVIK 900

Query: 897 TADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           TADW++D+GPEGG GGG ++ +GTPE VAE   SHT R+LKPML
Sbjct: 901 TADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPML 944