Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 946 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  937 bits (2423), Expect = 0.0
 Identities = 494/941 (52%), Positives = 662/941 (70%), Gaps = 12/941 (1%)

Query: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I V GAR HNLK+I+  IPR+ L V+TGLSGSGKSSLAFDT++AEGQRRY+E+ SAYAR 
Sbjct: 12  INVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRYIETFSAYARN 71

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
           FL  +E+PDVD I GLSP ISIEQK+T+ NPRSTVGT TEI+DYLRLL+AR G       
Sbjct: 72  FLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYARAGIAYSYLS 131

Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
              +   T  Q++D +L   +GK++ LLAP+++ RKG + +  E +  +GY+  RIDGE+
Sbjct: 132 GEEMVKYTEEQILDLILKDYKGKKIYLLAPLVRSRKGHYKELFEQVRKKGYLYVRIDGEL 191

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAE 243
            +++   KL+  K H IEVV+D+  V +   +RL +S  TA+    G  ++ D       
Sbjct: 192 REVTHGMKLDRYKNHDIEVVIDKLIVAEKDDKRLKQSVATAMRQGDGLLMILDAQTESVR 251

Query: 244 ELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLA 303
              +S    CP+ G S RE  P  FSFN+P GACP C GLGV    D D+VI + ELS+ 
Sbjct: 252 H--YSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVNQIDVDKVIPDRELSIY 309

Query: 304 GGAIRGWDR-RNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMN 362
            GAI    + +N   F  + +L + Y+  ++ P   LS +  + +LYGS  + I+ K  +
Sbjct: 310 EGAIAPLGKYKNAMIFWQIGALLEKYEATLKTPVKELSDDAVEEILYGSD-DRIKIK-SS 367

Query: 363 DRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVY 422
             G +S     +EGV+  ++   ++  S+  ++   +F     C  C+G RL +EA H  
Sbjct: 368 LIGTSSDYFVTYEGVVKYIQMLQEKDASATAQKWAEQFARTTVCPECKGARLNKEALHFR 427

Query: 423 VENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           + +  +  +++M I    ++  N+   L+ ++ KIA +ILKEI  RLKFL++VGL+YL L
Sbjct: 428 IHDKNINDLANMDINELYDWLMNVDQFLSDKQKKIAAEILKEIRTRLKFLLDVGLDYLAL 487

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
           +RS+ +LSGGE+QRIRLA+QIG+ LV V+Y+LDEPSIGLHQRDN RL+ +L  LRD+GN+
Sbjct: 488 NRSSVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNLRLIRSLKELRDMGNS 547

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEG-PLEAIMAVPESLTGQYMSGKRKIE 599
           VIVVEHD+D + AAD+VID+GP AG  GGEVV  G P E +    E++T QY++G+ KIE
Sbjct: 548 VIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFSGTPSEMLQT--ETMTSQYLNGEMKIE 605

Query: 600 VPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQ 659
           VP KR   N + +  L GA+GNNLK+V +  P+G   C+TGVSGSGKSTLIN+TL PI  
Sbjct: 606 VPAKRRKGNGKSIW-LKGAKGNNLKNVDVEFPLGKLICVTGVSGSGKSTLINETLQPILS 664

Query: 660 RQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVP 719
           ++    ++ +P  Y  I+GLE+ DKV+D+DQSPIGRTPRSNPATYTGVF+ +R LF  +P
Sbjct: 665 QKFY-RSLQDPLEYDSIEGLENIDKVVDVDQSPIGRTPRSNPATYTGVFSDIRNLFVSLP 723

Query: 720 ESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIK 779
           E++ RGY PGRFSFNV GGRCEAC G+G   +EM+FLPD+YVPC+ C GKRYNRETLE++
Sbjct: 724 EAKIRGYKPGRFSFNVSGGRCEACTGNGYKTIEMNFLPDVYVPCEVCHGKRYNRETLEVR 783

Query: 780 YKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVK 839
           +KGK+I +VLDMTI  A EFF+ VP +  K++ L DVGL YI+LGQS+TTLSGGE+QRVK
Sbjct: 784 FKGKSIADVLDMTINRAVEFFENVPQILNKIKVLQDVGLGYIKLGQSSTTLSGGESQRVK 843

Query: 840 LARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTAD 899
           LA ELSKR TG+TLYILDEPTTGLHF DI+ L+ VL+KL D+GNT++VIEHNLDVIK AD
Sbjct: 844 LATELSKRDTGKTLYILDEPTTGLHFEDIRVLMGVLNKLVDKGNTVIVIEHNLDVIKMAD 903

Query: 900 WIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           +I+D+GPEGG GGG +L  GTPE VA+ +  +T +FL+  L
Sbjct: 904 YIIDMGPEGGKGGGVLLSYGTPEEVAKSQKGYTPKFLREEL 944