Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 957 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN

 Score = 1299 bits (3362), Expect = 0.0
 Identities = 644/954 (67%), Positives = 773/954 (81%), Gaps = 18/954 (1%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M++I +RGARTHNLKN+NL +PR KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MEQIRIRGARTHNLKNVNLDLPRHKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFL LMEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEIHDYLRLLFARVG P C
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPYC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDH++PL AQ+VSQMVD  L+ PE  +LM+LAP++  RKGEH +  E + +QG+IR R+ 
Sbjct: 121 PDHEIPLEAQSVSQMVDAALALPEETKLMILAPVVANRKGEHVELFEEMQAQGFIRFRVR 180

Query: 181 G----------EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGG 230
                      ++ ++   PKL+   KHTI+VVVDR KVR D+ QRLAESFETAL L+ G
Sbjct: 181 SGGGTANEGVAKIYEVDSLPKLKKNDKHTIDVVVDRLKVRPDMKQRLAESFETALRLADG 240

Query: 231 TAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFD 290
            A+  +MD  K  E LFS+ FACPIC YS++ELEPRLFSFNNP GACP CDGLG   +FD
Sbjct: 241 RAIALEMDTDK--EHLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFFD 298

Query: 291 PDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYG 350
           P RV+ +P LSLA GA++GWDRRN +YFQML+SLA  Y+FD++     L   V K++L+G
Sbjct: 299 PKRVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAAFYEFDIDTAVEDLPEKVRKILLFG 358

Query: 351 SGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCE 410
           SGK+ I F Y+N+RG TS+R H FEG++ N+ERRY+ET+S AVREELAK+ +N+PC +C 
Sbjct: 359 SGKQEIPFSYINERGRTSVREHVFEGIIPNLERRYRETDSVAVREELAKYQNNQPCPACA 418

Query: 411 GTRLRREARHVYV----ENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDR 466
           GTRLRREAR V +    +   +  IS   +  A+ +F  L+L G + +IA+K++KEI  R
Sbjct: 419 GTRLRREARFVRIGSDGDARGIFEISGWPLRDALGYFQTLRLEGSKREIADKVVKEIVAR 478

Query: 467 LKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNER 526
           L FL NVGL+YL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+R
Sbjct: 479 LMFLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDR 538

Query: 527 LLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPES 586
           L+ TL HLRDLGN+VIVVEHDED IR AD+V+D+GPGAG HGG V+AEG  + + A   S
Sbjct: 539 LIATLKHLRDLGNSVIVVEHDEDMIRMADYVVDMGPGAGEHGGMVIAEGTPKQVQANAAS 598

Query: 587 LTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGK 646
           +TGQYMSG R IE P +R  A  EK L++  A GNNL+ V+L LPVGL TC+TGVSGSGK
Sbjct: 599 MTGQYMSGARNIEFPDER-KAPDEKRLRIVEAYGNNLQHVSLDLPVGLLTCVTGVSGSGK 657

Query: 647 STLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTG 706
           STLINDTL+      L G+   EPAPY  I+GLEHFDKVI++DQSPIGRTPRSNPATYTG
Sbjct: 658 STLINDTLYHAVAHHLYGSA-TEPAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATYTG 716

Query: 707 VFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQC 766
           +FTP+RELFAGVP ++ RGY  GRFSFNV+GGRCE+CQGDGV+KVEMHFLPD+YVPCD C
Sbjct: 717 LFTPIRELFAGVPAAKERGYEAGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDVC 776

Query: 767 KGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQS 826
            GKRYNRETL+++YKGK I EVLDMT+E A EFF  VP +ARKL+TL+DVGL YIRLGQS
Sbjct: 777 HGKRYNRETLDVQYKGKNISEVLDMTVENAYEFFKPVPVVARKLKTLLDVGLGYIRLGQS 836

Query: 827 ATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIV 886
           ATTLSGGEAQRVKL+ ELSKR TG+TLYILDEPTTGLHF DI  LL+V+H+LRDQGNT+V
Sbjct: 837 ATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNTVV 896

Query: 887 VIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           +IEHNLDVIKTADW++DLGPEGG+GGG+I+  GTPE VA+ +AS T ++L P+L
Sbjct: 897 IIEHNLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAKSKASFTGKYLAPLL 950



 Score =  142 bits (358), Expect = 1e-37
 Identities = 78/200 (39%), Positives = 114/200 (57%), Gaps = 15/200 (7%)

Query: 405 PCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIG 464
           PC  C G R  RE   V  +   +  + DM++ +A EFF              K +  + 
Sbjct: 772 PCDVCHGKRYNRETLDVQYKGKNISEVLDMTVENAYEFF--------------KPVPVVA 817

Query: 465 DRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 523
            +LK L++VGL Y+ L +SA TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D
Sbjct: 818 RKLKTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHD 877

Query: 524 NERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAV 583
              LL  +  LRD GNTV+++EH+ D I+ AD VID+GP  G  GG+++A+G  E +   
Sbjct: 878 IALLLEVIHRLRDQGNTVVIIEHNLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAKS 937

Query: 584 PESLTGQYMSGKRKIEVPKK 603
             S TG+Y++   K    KK
Sbjct: 938 KASFTGKYLAPLLKRAASKK 957