Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho (NCBI) from Escherichia coli BW25113

Subject, 422 a.a., transcription termination factor Rho from Burkholderia phytofirmans PsJN

 Score =  595 bits (1535), Expect = e-175
 Identities = 291/418 (69%), Positives = 359/418 (85%)

Query: 1   MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
           M+L+ELK   VSELI +   + +E+  R+RKQ+++FAILK+ AK+G+ IFGDG LE+L D
Sbjct: 1   MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
           GFGFLRS ++SYLA  DDIY+SPSQIRRFNL TGDTI G++R PK+GERYFAL+KV++VN
Sbjct: 61  GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN 120

Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
              PE +++KI+FENLTPLH N  L +ER     E++T R++D+ +PIG+GQRGL+VA P
Sbjct: 121 GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP 180

Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           K+GKT++LQ+IA +I  NHPD VL VLLIDERPEEVTEMQR V GEV+ASTFDEPA+RHV
Sbjct: 181 KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVE K DV+ILLDSITRLARAYNTVVPASGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
           FGAARN+EEGGSLTII TALI+TGS+MD+VIYEEFKGTGNME+HL R++AEKRV+P+I+ 
Sbjct: 301 FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360

Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
           N+SGTR+EELL   E LQK+W+LRK IH M E+++MEFL++K+  TK+N +FF+MM+R
Sbjct: 361 NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRR 418