Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 489 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas fluorescens SBW25-INTG

 Score =  320 bits (820), Expect = 6e-92
 Identities = 169/371 (45%), Positives = 236/371 (63%), Gaps = 1/371 (0%)

Query: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
           +F DF L P+++ A++  GF  CTPIQA  L  TLAG+D  G+AQTGTGKT AFL S   
Sbjct: 101 RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 160

Query: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129
            LL  P   +R + +PRALI+APTREL VQI  DA  L + TGL +    GG  +DKQLK
Sbjct: 161 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLK 220

Query: 130 VLESG-VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPP 188
            LE+   DIL+ T GRL+D+ ++  ++L  ++V+VLDEADRM D+GFI  +R + R+ PP
Sbjct: 221 HLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 280

Query: 189 ANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 248
             +R  +LFSAT +  V  LA +   +   +E+E        +++ ++  +  +K +LL 
Sbjct: 281 KAERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLY 340

Query: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308
            L+ +   +R ++FAN K     I   L  DG     L+GDV Q KR++ L+ F  G + 
Sbjct: 341 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 400

Query: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368
           +LVATDVA RG+HI  ++HV N+ LP+  +DYVHRIGRTGRAGA+G SIS A E+ +  L
Sbjct: 401 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 460

Query: 369 PAIETYIGHSI 379
           P+IET +G  I
Sbjct: 461 PSIETLLGRKI 471