Pairwise Alignments

Query, 548 a.a., inner membrane protein translocase component YidC (NCBI) from Escherichia coli BW25113

Subject, 563 a.a., protein translocase subunit yidC from Pseudomonas syringae pv. syringae B728a

 Score =  461 bits (1187), Expect = e-134
 Identities = 247/562 (43%), Positives = 347/562 (61%), Gaps = 33/562 (5%)

Query: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG--------------- 45
           MD +R +L++AL  V+++    W QD        Q    +TTA G               
Sbjct: 1   MDIKRTILIVALAIVTYVGVLKWNQDYGQAAMPTQNVAASTTAPGIPDTAAGTNGSASAD 60

Query: 46  ----------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ 95
                     +AA    PA     LI VKTDVLDL I+  GGDV Q  LP YP+  +   
Sbjct: 61  VPSANATANTAAAPLETPAVASKDLIHVKTDVLDLAIDPVGGDVVQLRLPLYPRRQDRPD 120

Query: 96  -PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYT 154
            PFQL +   +  + AQSGLTG +GPD  A G RP+Y   +  Y LA+GQ+ + V + ++
Sbjct: 121 VPFQLFDNGGERTFLAQSGLTGTNGPDARAAG-RPVYTSTQKTYQLADGQDTMVVDLKFS 179

Query: 155 DAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFA 214
           +   N + K F  KRG Y + + Y V N   +P   + F QLK+  +  P   T +    
Sbjct: 180 ENGVN-YIKRFTFKRGLYDLVMTYVVDNQSAQPWSGNLFAQLKRDASSDPSSTTATGTA- 237

Query: 215 LHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNF 274
             T+ GAA  T  E Y+K     I D   +  + +GGWVA LQ YF TAWIP ++ TN  
Sbjct: 238 --TYLGAALWTAAEPYKKVSMKDI-DKGQVKETVQGGWVAWLQHYFVTAWIPDHNATNAV 294

Query: 275 YTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW 334
            T     G   IG+ S  + V PG  G  ++TL+ GP+ Q  +  ++P L+LTVDYG+LW
Sbjct: 295 QTRKDSQGNYIIGFTSPTLSVAPGAQGETSATLYAGPKSQAVLKELSPGLELTVDYGFLW 354

Query: 335 FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMR 394
           FI+QP+F LL+ IH+ +GNWG+SII++T +++G+ +PL+ A Y SMA+MR + PK+  ++
Sbjct: 355 FIAQPIFWLLQHIHAILGNWGWSIIVLTMLIKGLFFPLSAASYKSMARMRAVAPKLALLK 414

Query: 395 ERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALW 454
           E+ GDD+Q++SQ MM LYK EK+NPLGGC P+L+QMP+FL+LY++L+ SVE+RQAP+ LW
Sbjct: 415 EQHGDDRQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLSLYWVLLESVEMRQAPWILW 474

Query: 455 IHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLV 514
           I DLS +DP++ILPI+MG TMF  Q+++PT   DPMQ K+M  MP+IFT FFLWFP+GLV
Sbjct: 475 ITDLSIKDPFFILPIIMGATMFIQQRLNPTP-PDPMQAKVMKMMPIIFTFFFLWFPAGLV 533

Query: 515 LYYIVSNLVTIIQQQLIYRGLE 536
           LY++V+N ++I QQ  I R +E
Sbjct: 534 LYWVVNNTLSIAQQAYITRKIE 555