Pairwise Alignments

Query, 394 a.a., 2-module integral membrane pump; multidrug resistance (VIMSS) from Escherichia coli BW25113

Subject, 394 a.a., multidrug transporter EmrD from Klebsiella michiganensis M5al

 Score =  698 bits (1802), Expect = 0.0
 Identities = 352/394 (89%), Positives = 366/394 (92%)

Query: 1   MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQ 60
           MKR +N NLLLMLVLLVAVGQMAQTIYIPAIADMA  LNVREGAVQSVM AYLLTYGVSQ
Sbjct: 1   MKRHKNFNLLLMLVLLVAVGQMAQTIYIPAIADMAVSLNVREGAVQSVMAAYLLTYGVSQ 60

Query: 61  LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTL 120
           LFYGP+SDRVGRRPVILVGMSIFMLATLVA+TT SL VLIAASAMQGMGTGVGGVMARTL
Sbjct: 61  LFYGPLSDRVGRRPVILVGMSIFMLATLVAITTHSLPVLIAASAMQGMGTGVGGVMARTL 120

Query: 121 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA 180
           PRDLYE  QLRHANSLLNMGILVSPLLAPLIGG+LDT+WNWRAC++FLLVLCAGVTFSMA
Sbjct: 121 PRDLYEGAQLRHANSLLNMGILVSPLLAPLIGGILDTLWNWRACFVFLLVLCAGVTFSMA 180

Query: 181 RWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 240
           RWMPETRP  APRTRL+T+YKTLFG   FNCYLLMLIGGLAGIA FEACSGVLMGAVLGL
Sbjct: 181 RWMPETRPTGAPRTRLITNYKTLFGTGAFNCYLLMLIGGLAGIAVFEACSGVLMGAVLGL 240

Query: 241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 300
           SSM+VSILFILPIPAAFFGAWFAGRPNKRF TLMWQSVICCLLAG+LMWIP   GVM VW
Sbjct: 241 SSMSVSILFILPIPAAFFGAWFAGRPNKRFPTLMWQSVICCLLAGVLMWIPGLLGVMTVW 300

Query: 301 TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT 360
           TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLA LSAM+PQT
Sbjct: 301 TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLAWLSAMMPQT 360

Query: 361 GQGSLGLLMTLMGLLIVLCWLPLATRMSHQGQPV 394
           GQGSLGLLM LMGLLI+LCWLPLA+R      PV
Sbjct: 361 GQGSLGLLMMLMGLLILLCWLPLASRFHQHQLPV 394