Pairwise Alignments

Query, 307 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

Subject, 293 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 17/302 (5%)

Query: 1   MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGD 60
           M     G+L +  A +L+G + + ++ I     + +  +T+ R   A L+L  +  V   
Sbjct: 1   MSKASSGLLELHSAVLLFGGTALFSKLI----PLGALDITVYRCAIAALVLALI--VKAT 54

Query: 61  KIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLV 120
           +    + N +D    L   V+ +L   +T+  +++ S+ A   +  F  P + V    L+
Sbjct: 55  RHSLRLGNKRDYGIALALGVIVSLH-WVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLI 113

Query: 121 RKSRPGILVFCAILTSLVGTFLLVTH---GNPTSLSISPAALFWGIASAFAAAFYTTYPS 177
             +RP +      +  L G  LL+     GN  +L I       G+ SA           
Sbjct: 114 NGTRPHLRDLVCGVAVLTGVALLIPEASLGNDITLGI-----LVGVLSAALFTARNLLHK 168

Query: 178 TLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYL 237
              A+Y     + +  L+  L L  F   + T   V   +      L VI T+   +L+ 
Sbjct: 169 RYFAQYTGPQAMFYQTLVAVLFLGSFV--ESTPPEVTSDVWQLLILLGVIFTATPHALFT 226

Query: 238 KGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVILISMDSRRRA 297
              + +      ++SC +P    +L+LLLLG T  L   LG LL++S+ +  +  S R+ 
Sbjct: 227 SALRHLSAKTVGLVSCLQPFYGTVLALLLLGETVNLSTLLGGLLVVSTAVYETAQSHRQQ 286

Query: 298 RK 299
           R+
Sbjct: 287 RQ 288