Pairwise Alignments

Query, 307 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

Subject, 309 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 27/312 (8%)

Query: 4   TRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLIL-LTLSFVHGDKI 62
           T K ++ ++I    WGS     + ++  S++ +  L   R + A + L + L  V   K+
Sbjct: 6   TIKAVILLIICTFFWGSCFPIGKQVL--SEVHALTLVFWRFVIAAVCLAIYLKLVRMPKL 63

Query: 63  FSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLVRK 122
              IN     + +++ S VG   + L     +  +NA   +++  LSP I      +  +
Sbjct: 64  HLSINQW---LWIILVSAVGIGGLNLGLFTGLASTNATNGSLIMALSPLITSLIACVTLR 120

Query: 123 SRPGILVFCAILTSLVGTFLLVTHGNPTSL-----SISPAALFWGIASAFAAAFYTTYPS 177
           + P      ++L SL G  +++T+G+  +L     +     +F G+    A +FY TY S
Sbjct: 121 TLPSFAQCFSLLVSLTGVLMVITNGHLETLFSMQINHGDKLIFGGM---LAWSFY-TYFS 176

Query: 178 TLIARYGTLPVVGWSML--------IGGLILLPFYARQGTNFVVNGSLILA-FFYLVVIG 228
             I+R+  +PV+ ++ +        IG L L             + +L +A   Y+ V G
Sbjct: 177 QGISRW--MPVIPYTFIGMLSGAAVIGALCLASPEVHPFAELFNSTALGMAEVVYIGVFG 234

Query: 229 TSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVIL 288
           T   + L+L G + +G   A++     P+ S L S  +LG   T    LG +++++ ++L
Sbjct: 235 TVAGYLLWLNGVRQLGSANAALFFNFVPIFSVLTS-FMLGQAVTELQLLGIIVVIAGLLL 293

Query: 289 ISMDSRRRARKI 300
             +   +R  K+
Sbjct: 294 PRIIRFKREPKV 305