Pairwise Alignments

Query, 378 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

Subject, 375 a.a., membrane fusion protein, multidrug efflux system from Paraburkholderia bryophila 376MFSha3.1

 Score = 84.7 bits (208), Expect = 4e-21
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 18/304 (5%)

Query: 66  ITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQ-- 123
           + P+V G V +V  K+NQ +  G+VL KLD   Y AR+ +  A++ +A   +  L+A+  
Sbjct: 66  MAPKVNGFVADVLVKDNQFVHAGQVLVKLDSRDYDARLAQATAEVRSAQAAVTELQAKKS 125

Query: 124 -----LTEAQANTTQVSAERDRLFKNYQRY--LKGSQAAVNPFSERDIDDARQNFLAQDA 176
                + E +A      AE  R   +  RY  L    A  N   ER   D  +   A D 
Sbjct: 126 LQLATIDEQKAEVRANGAELTRSAADQARYRELVKDDAVSNQVVERANADLTKAHAAVDR 185

Query: 177 LVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIR 236
                +A Q QI + LD+ +    ++I +  A    A  N+E T IR+P +GYV     R
Sbjct: 186 SGASLIAAQRQI-AVLDAQIGDALARIATAEAAQRVAALNVEYTTIRSPIDGYVGNRTAR 244

Query: 237 PGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTS 296
            G  A       ++  +P     I A F+++ L ++  GD  +V  +A   ++  G + S
Sbjct: 245 VGLLANTGV--SLLTVVPASGLWIDANFKEDQLKKMSVGDTVDVDLDASSTRI-RGVVES 301

Query: 297 ILPVVPGGSYQ---AQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDH 353
           + P   G ++    A+    + T +     V   + + P +    L  G+ A V V+ DH
Sbjct: 302 LAPAT-GATFSVLPAENATGNFTKIVQRVPVRVRLVV-PQNMQGVLRPGLSATVKVHLDH 359

Query: 354 FSHV 357
             H+
Sbjct: 360 VDHL 363