Pairwise Alignments

Query, 402 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

Subject, 443 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Burkholderia phytofirmans PsJN

 Score =  125 bits (313), Expect = 3e-33
 Identities = 105/410 (25%), Positives = 188/410 (45%), Gaps = 22/410 (5%)

Query: 10  RWLTL-IGTIITQFALGSVYTWSLFNGALSAKLDAPVSQVAFSFGLLSLGLAISSSVAGK 68
           RW+ L IG +         Y W+LF   +        + +  +F +  +       V G 
Sbjct: 18  RWVQLAIGIVCMGLVANLQYAWTLFVVPMDNAHHWGQAAIQTAFTIFIVTETWLVPVEGW 77

Query: 69  LQERFGVKRVTMASGILLGLGFFLTAHSDNLMMLWLSAGVLVGLADGAGYLLTLSNCVKW 128
           L ++FG + V +   +   LG+ + AH+++L  L+ +A V+ G+  G  Y   +   +KW
Sbjct: 78  LVDKFGPRPVVIGGSLCAALGWIIDAHANSLAELY-AAAVIAGIGAGCVYGTCVGTALKW 136

Query: 129 FPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALLMIVFGATLM-- 186
           FP+++GL +      +G G+         +++  G + TF+ +G    + I+  AT++  
Sbjct: 137 FPDKRGLAAGLTAAGFGAGAAVTVIPIADMIQRSGYQHTFMFFGIFQGVCILLLATMLIR 196

Query: 187 KDAPKQEVKTSNGVVEK-DYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLA 245
              P   V T   V  K DYT  E +R P +W+L +MF+     G+        IA+   
Sbjct: 197 PKPPATAVATKRIVASKIDYTPGEMIRSPLFWVLYLMFVFVAAGGIIATAQLGPIAKEFG 256

Query: 246 HLDVVSAANAVTV------ISIANLSG---RLVLGILSDKIAR---IRVITIGQVISLVG 293
              +  +   +T+      +SI NL     R + G LSD+I R   + +I +G+ ++L+G
Sbjct: 257 FAKLPVSLMGITLPLLTMTLSIDNLCNGFTRPLCGFLSDRIGRENTMFMIFLGEGVALLG 316

Query: 294 MAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGS 353
           +      P  A  FFA  A V   +G   ++FP+  ++ FG    A N G +Y   G  S
Sbjct: 317 LMQFGHNPY-AFMFFA--AAVFLCWGEIFSIFPATCADTFGSKYAAANAGTLYTAKGTAS 373

Query: 354 ICGSIIASL-FGGFYVTFYVIFALLILSLALSTT-IRQPEQKMLREAHGS 401
           +   + + L   G + T ++  A++ ++ A+S   I  P +K   E  G+
Sbjct: 374 MLVPLASVLSANGGWSTVFISAAVVSIAAAVSAKFILAPMRKRWIENSGA 423