Pairwise Alignments

Query, 405 a.a., putative transport (VIMSS) from Escherichia coli BW25113

Subject, 386 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  256 bits (655), Expect = 6e-73
 Identities = 129/360 (35%), Positives = 210/360 (58%)

Query: 27  FASYLTIGLPLAVLPGYVHDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADSLGPKKIV 86
           F +++TIGLPL V+P YV   +GF     GL + +Q+ AT+L+R  AGR  D +G + ++
Sbjct: 25  FLTFMTIGLPLPVVPLYVGKTLGFGNVLVGLSVGIQFLATILTRGVAGRQVDRMGARPVM 84

Query: 87  VFGLCGCFLSGLGYLTAGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSL 146
           + G+  C  SGL  + +    +  V+ LL+L +GR++LG G+S    G   WG+G VG  
Sbjct: 85  LRGMFFCGCSGLALVLSAQLPAAGVVRLLVLIVGRLVLGFGESQLIVGMFGWGIGTVGQP 144

Query: 147 HIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKAS 206
             G+V++W G+  YGA+A+ AP+G   YH GG+  +  +++ + ++A   A P   V   
Sbjct: 145 RSGKVLAWTGMAMYGAIALAAPIGYWLYHRGGMTYVGTVVVHLPMIAAFFAYPVAGVAPL 204

Query: 207 KGKPLPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSCAFVG 266
           KG+  PF +V+G +W  G+A+ L   GF  I  F++L + A+GW G   AL+ F  AFV 
Sbjct: 205 KGEHQPFWSVIGLIWQPGLAVLLQGVGFAAIGAFVSLDFAARGWAGTGLALSCFGGAFVL 264

Query: 267 TRLLFPNGINRIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALG 326
            R+L  +  +R GG+ +A+   ++E++G  L+ +A    MA +G  + GAG S+ FP+LG
Sbjct: 265 VRVLCGHLPDRYGGMPIAIASLAIEMVGQALLFLAPTAPMALLGAAVTGAGCSMAFPSLG 324

Query: 327 VVAVKAVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLL 386
           V  VK V   ++  AL  +  F DL+ G+TGP+ G+  +  G P ++   +   A+ L +
Sbjct: 325 VEVVKRVDVHSRATALGGFAAFQDLAYGLTGPVTGVFATAFGFPSVFAVGSACAAVGLFV 384



 Score = 27.3 bits (59), Expect = 8e-04
 Identities = 48/223 (21%), Positives = 80/223 (35%), Gaps = 30/223 (13%)

Query: 180 QALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLGRVWLYGMALALASAGFGVIAT 239
           +ALA +   V L  + + +P P V    GK L F          G  L   S G   +AT
Sbjct: 15  RALAALTTAVFLTFMTIGLPLPVVPLYVGKTLGF----------GNVLVGLSVGIQFLAT 64

Query: 240 FITLFYDAKGWDGAAFALTLFSCAFVGTRLLFPNGINRIGGLNVAMICFSVEIIGLLLVG 299
            +T     +  D             +G R +   G+   G   +A++  +     L   G
Sbjct: 65  ILTRGVAGRQVDR------------MGARPVMLRGMFFCGCSGLALVLSA----QLPAAG 108

Query: 300 VATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGVTGPL 359
           V  +  +  +G L+ G G S +   +    +  V Q   G  LA   + M  ++ +  P+
Sbjct: 109 VVRL-LVLIVGRLVLGFGESQLIVGMFGWGIGTVGQPRSGKVLAWTGMAMYGAIALAAPI 167

Query: 360 AGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKKRPP---EHVP 399
              +    G+  +      L  IA    + +    P   EH P
Sbjct: 168 GYWLYHRGGMTYVGTVVVHLPMIAAFFAYPVAGVAPLKGEHQP 210