Pairwise Alignments

Query, 206 a.a., 30S ribosomal protein S4 (NCBI) from Escherichia coli BW25113

Subject, 206 a.a., RNA-binding S4 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  152 bits (385), Expect = 3e-42
 Identities = 91/212 (42%), Positives = 132/212 (62%), Gaps = 13/212 (6%)

Query: 1   MARYLGPKLKLSRREGTDLF--LKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLRE 57
           M +    K K+ RR G +++   KS V       + E  PGQHG R K ++SD+G+QLR 
Sbjct: 1   MTKRTSAKYKIDRRMGENIWGRPKSPVN------RREYGPGQHGQRRKQKMSDFGLQLRA 54

Query: 58  KQKVRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116
           KQK++  YG L E+QFR  Y EA R+KG+TGENL+ LLE RLD VVYR  F  T   ARQ
Sbjct: 55  KQKLKGYYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQ 114

Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176
            V+H  ++VNG  VNI SY+V   DV+ +REK+++ + +  A +L E R+ P +++ D  
Sbjct: 115 FVNHGHVLVNGERVNIPSYRVKEGDVIEVREKSRQMAALLEATQLPE-RDVPDYVDADHN 173

Query: 177 KMEGTFKRKPERSDLSADI--NEHLIVELYSK 206
           KM+ TF R P  +D+   +    +L++E Y++
Sbjct: 174 KMKATFVRTPGLADVPYPVMMEPNLVIEYYAQ 205