Pairwise Alignments

Query, 477 a.a., D-alanyl-D-alanine carboxypeptidase (NCBI) from Escherichia coli BW25113

Subject, 528 a.a., Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) from Rhodospirillum rubrum S1H

 Score = 97.8 bits (242), Expect = 8e-25
 Identities = 118/430 (27%), Positives = 184/430 (42%), Gaps = 70/430 (16%)

Query: 52  YHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTL 111
           +++Q+  LPAS  KV T +AAL  LGP +R+ T L + G+V +GVLKGDL    G DP L
Sbjct: 79  HNAQEPFLPASVSKVPTTVAALELLGPSYRWETRLVSTGSVVDGVLKGDLYLVGGGDPVL 138

Query: 112 KRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDR 171
             + +  +V +L  +G+  +DG  L D ++ AS  +    P       ++    A  +D 
Sbjct: 139 DGRRLSALVDSLGTAGIRAVDGRFLYDDTLIASAPEIE--PSQPADLAYNPGFGALALDF 196

Query: 172 NCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTL 231
           N   V L   PK G     R+   + V     VR    G            P D    T 
Sbjct: 197 N--RVMLTWDPKGGP----RMGEVFDVPPVDSVRFRVSG------------PQDPPWSTK 238

Query: 232 TGCLPQRSEPLPLAFA---------VQDGASYAGAILKDELKQAGITW------------ 270
            G L     P P+  A            G S+   +L    K +G TW            
Sbjct: 239 AGALRYEDTPPPVVTAGLAPMAHPPQTPGESW---VLAPTWKGSGSTWLPVKHPGAHVAQ 295

Query: 271 -SGTLLRQTQVN----EPGT------VVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIG 319
            +  L ++  V     +PG       V+   +S PL ++    LK S+N++A+    MIG
Sbjct: 296 VARALAQRDGVTLPPPQPGAAPPRARVIGLSESPPLFEVATAALKHSNNLVAE----MIG 351

Query: 320 -HARFNVPGTWRAGSDAVRQIL----RQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVL 374
             A   + G   A +++   +         G+D     +A+ SGL+  + + P  M  +L
Sbjct: 352 MTATRRITGRALAPTESAETLAALFRATLPGLDWSTFRLANHSGLTMDSRMTPEQMTAIL 411

Query: 375 QYIAQHD-NELNFISMLPLAGYDGSLQYRAGLHQAGVDGK--VSAKTGSLQGVYNLAGFI 431
            Y   H  + L++  +LP   +   L+  + L +   DG+  V AKTG++     LAG+I
Sbjct: 412 DYAQLHAFSGLDYAGLLPTRRW--GLEDDSDLPETR-DGRLPVWAKTGTVYYGRGLAGYI 468

Query: 432 TTASGQRMAF 441
              SG  +AF
Sbjct: 469 VPRSGHLLAF 478