Pairwise Alignments

Query, 211 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 327 a.a., NADH dehydrogenase (ubiquinone) (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 21/223 (9%)

Query: 4   VLITGATGLVGGHLLRMLINEP-KVN-AIAAPTRRPLGDMPGVFNPHDPQLS----DALA 57
           V I G +G VG ++ R +  E  +V  A+  P         G     +P LS    DA  
Sbjct: 5   VTIFGGSGFVGRYIARRMAQEGWRVRVAVRRPNEALFVRTYGAVGQVEPILSNIRDDASV 64

Query: 58  QVT-DPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANA 116
           Q      D+V  C+G       +    + +     V  A      G    + +SA+GA+ 
Sbjct: 65  QAAVTGADVVINCVGILSETGKNTFGLVQSHGAARV--ARLSAEAGVGRFVQISAIGADP 122

Query: 117 HSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLP----- 171
            +   Y R K E E+A++ Q  P+  I RPS++ G    Q  N   FA + RL P     
Sbjct: 123 AAKSDYARTKAEGEQAVL-QAMPEAVILRPSIVFGPED-QFFNR--FASMSRLGPILPVV 178

Query: 172 ---GNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE 211
                ++ +   DVAR  +  ++     G+  L   ++    E
Sbjct: 179 GAETKFQPVYVDDVARAAVKAALGQAKPGIYELGGPDVNSFRE 221