Pairwise Alignments

Query, 346 a.a., predicted permease (NCBI) from Escherichia coli BW25113

Subject, 458 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score = 60.5 bits (145), Expect = 8e-14
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 20/278 (7%)

Query: 80  AAVLGVILGSLIQVLIPRDWLLRTLGQSRF-----RGTLLGTLFSLPGMMCTCCAAPVAA 134
           A V  +++G+++ +L  R+   R    +R       G  LG + +L  +M       V A
Sbjct: 181 AIVFALVIGAIMHLLYRREEAARAAKSARGFAGDDDGHPLGDIVALFSLMIGIL---VFA 237

Query: 135 GMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKW 194
                + S   A+  W        A L+    V  W ++   L+    +V   A L  +W
Sbjct: 238 NWASAENSAWMAVHAWKWPITATLAILLASLLVRRWNWSVRPLLMIGALVAASALLAPQW 297

Query: 195 VRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHAD 254
                       +     Q      W    W      +P+ +  VL+ G   +   P  +
Sbjct: 298 PELAMVIGIAGLMLQASRQNAASQEWVGQSWDFTKQIMPLLLGGVLIAGM--LLGRPGHE 355

Query: 255 GAV----------DNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMT 304
           G +          DNS    +  +V G      T  E+PIV+ ++ AGMG  PALA+L+ 
Sbjct: 356 GLIPSEWVVWAVGDNSFTSTLLASVLGAFMYFSTLTEVPIVEGLLGAGMGKGPALAILLA 415

Query: 305 LPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGL 342
            PA+SLP+++++R     +   +  ++V V   + G L
Sbjct: 416 GPALSLPNMLVIRTVLGTQKTIVYCSLVVVMATLSGYL 453



 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 88  GSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGAL 147
           G++++ L P        G +   GTLL         +C+C   P+  G+ R+   +G A+
Sbjct: 97  GAVMKHLGPASPKPVAFGVASIAGTLLA--------VCSCTVLPLFGGIYRRGAGLGAAI 148

Query: 148 AFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQA 203
           AF    P +N   +V    VLG      R V  +V  L+I  ++    R     +A
Sbjct: 149 AFLYSGPAINVMAIVVTAKVLGAELGIARAVGAIVFALVIGAIMHLLYRREEAARA 204



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 238 AVLVLGAARVWL-----FPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAG 292
           A ++ GA  V++       H   A    + + VA ++AG L  + +   +P+   +   G
Sbjct: 83  AFVIAGAMAVYISQGAVMKHLGPASPKPVAFGVA-SIAGTLLAVCSCTVLPLFGGIYRRG 141

Query: 293 MGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGL 342
            G   A+A L + PA+++ ++++  K   A+          V  +++G +
Sbjct: 142 AGLGAAIAFLYSGPAINVMAIVVTAKVLGAELGIARAVGAIVFALVIGAI 191