Pairwise Alignments

Query, 338 a.a., IS5 transposase and trans-activator (NCBI) from Escherichia coli BW25113

Subject, 327 a.a., transposase, IS4 family from Pseudomonas syringae pv. syringae B728a

 Score =  352 bits (903), Expect = e-102
 Identities = 175/318 (55%), Positives = 229/318 (72%), Gaps = 7/318 (2%)

Query: 13  MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETM 72
           M  Q+TFAD+E++ KR++TRKE+FL  M+Q++PW+ ++ +IEP+YPK   GR  YPL  M
Sbjct: 1   MMKQMTFADAEYAGKRKRTRKELFLIEMDQVVPWKGLIALIEPYYPKGEGGRPAYPLMAM 60

Query: 73  LRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQ 132
           LR+H MQ+W+  SD AME+ALYE   +R F+ LSL+  +PD TTI+NFR LLE+H+LA  
Sbjct: 61  LRVHLMQNWFGYSDPAMEEALYETTILRQFSGLSLER-IPDETTILNFRRLLEKHELATG 119

Query: 133 LFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAH 192
           +   IN +L + G+ + QGT+VDAT+I APSSTKNK+ +RDPEMHQTKKGNQ++FG KAH
Sbjct: 120 ILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAH 179

Query: 193 IGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWL 252
           IG D +SGL HS+V TAAN  D+ Q+  LLHGEE  V ADAGY G  +REE     V W 
Sbjct: 180 IGADDESGLVHSVVVTAANVADVTQVAKLLHGEENVVCADAGYTGVEKREEHTGRKVIWQ 239

Query: 253 IAERPGKVRTLKQHPRKN---KTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLL 309
           IA R     T K+H ++N   K    IE  KA +RA+VEHPFR+IKRQFG+ K R++GL 
Sbjct: 240 IAARRS---TYKKHGKRNVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLA 296

Query: 310 KNDNQLAMLFTLANLFRA 327
           KN  Q+  LF L+NL+ A
Sbjct: 297 KNTAQMVTLFALSNLWMA 314