Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

 Score =  644 bits (1662), Expect = 0.0
 Identities = 324/572 (56%), Positives = 429/572 (75%), Gaps = 4/572 (0%)

Query: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64
           +++  R++ +T     +LPPLL RLYA+RGV+S  EL++S+  ++P+QQL G++ AV++L
Sbjct: 1   MRIEPRQLPDTLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLL 60

Query: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124
             A  +  RI++VGDFDADGAT++ + +L +R LG +++DYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VTALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184
           A AR  QL++TVDNGISS  GV  A++ G+ V+VTDHHLPG  LPAA+AI+NPN   C F
Sbjct: 121 ALARAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEF 180

Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244
           PSK+LAGVGV FY+++ALR  LR  GW+   +   PN+ ELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKALAGVGVIFYVLMALRARLRSLGWY--ASTPQPNIGELLDLVALGSVADVVPLDANN 238

Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304
           RIL  QG+ RIRAG+ RPGIKA+LEVA RDA ++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 239 RILVHQGLERIRAGRARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGI 298

Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364
             LL D+   AR +A +LD +NQ RK IEQGMQ EAL   + L    +++P GL ++ P+
Sbjct: 299 ECLLTDDPALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPFGLCLFDPQ 356

Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424
           WHQGV+GILASR+KER+ RP IAFA AGDG LKGSGRS+ G H+RDAL  +   +P ++ 
Sbjct: 357 WHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLIS 416

Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484
           K+GGHAMAAGL+L E  F LF + F   V   L    L G ++SDG L+  E  +E+A+ 
Sbjct: 417 KYGGHAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARA 476

Query: 485 LRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544
           LR AGPWGQ FPEP+F G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+
Sbjct: 477 LRHAGPWGQHFPEPMFHGVFQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDREIWPN 536

Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576
             VR V+LAYKLD+NEFRG  ++Q++I +I P
Sbjct: 537 PTVRWVELAYKLDLNEFRGQETVQLMIAHIEP 568