Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  644 bits (1660), Expect = 0.0
 Identities = 321/572 (56%), Positives = 427/572 (74%), Gaps = 4/572 (0%)

Query: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64
           +++  R + +T     ++PPLL RLYA+RGV+S  EL++S+  ++P+QQL G++ AV++L
Sbjct: 1   MRIEPRLLPDTLPFLGDIPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL 60

Query: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124
             A  +  RI++VGDFDADGAT++ + +L +R LG +++DYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VTALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184
           A  R   L++TVDNGISS  GV  A+  G+ V+VTDHHLPGD LP A+AI+NPN   C F
Sbjct: 121 ALTREPHLLITVDNGISSVEGVAAAKKAGLKVLVTDHHLPGDELPLADAIVNPNQPGCEF 180

Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244
           PSK+LAGVGV FY+++ALR  LR  GW++ +    PN+ ELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKALAGVGVIFYVLMALRARLRSLGWYESK--PQPNIGELLDLVALGSVADVVPLDANN 238

Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304
           RIL  QG+ RIRAG+ R GIKA+LEVA RD  ++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 239 RILVHQGLERIRAGRARAGIKAILEVAKRDHSRITSTDLGFILGPRLNAAGRLDDMSLGI 298

Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364
             LL ++ G AR +A +LD +NQ RK IEQGMQ EAL   + L    +++P GL ++ PE
Sbjct: 299 ECLLTEDAGAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPFGLCLFDPE 356

Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424
           WHQGV+GILASR+KER+ RP IAFA AGDG LKGSGRS+QG H+RDAL  +   +P ++ 
Sbjct: 357 WHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLIS 416

Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484
           K+GGHAMAAGL+L E  F LF + F   V   L    L G ++SDG L+  E  +E+A+ 
Sbjct: 417 KYGGHAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARA 476

Query: 485 LRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544
           LR AGPWGQ FPEPLF G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+
Sbjct: 477 LRHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDIWPN 536

Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576
             ++ V+LAYKLD+NEFRGN ++Q++I +I P
Sbjct: 537 PTIKWVELAYKLDLNEFRGNETVQLMIAHIEP 568