Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas stutzeri RCH2

 Score =  640 bits (1651), Expect = 0.0
 Identities = 324/572 (56%), Positives = 425/572 (74%), Gaps = 2/572 (0%)

Query: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64
           +++  R + E      ELPPLL+RLYA+RGV  A+EL++ +  ++P++QL G++ AVE+L
Sbjct: 1   MRIEPRPLPEQLPDLGELPPLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVELL 60

Query: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124
             A  +  RI+ VGDFDADGAT++ + VL +R LG +++DYLVPNRFE GYGL+PE+V  
Sbjct: 61  VEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAV 120

Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184
           A  R   L+VTVDNGISS  GV  A++ G+ V+VTDHHLPG  LPAA+AI+NPN  +C F
Sbjct: 121 ALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAF 180

Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244
           PSK +AGVGV FY++LALR  LR+  WF  +  A PNLAELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKCIAGVGVIFYVLLALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANN 240

Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304
           RIL  QG++RIRAG+ R G++A+LEVA RD +++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 241 RILVHQGLARIRAGRARAGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI 300

Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364
             LLC++   AR +A +LD LN+ RK IEQGMQ EAL   + L    + LP GL ++  +
Sbjct: 301 ECLLCEDEALARDMAVQLDELNKDRKSIEQGMQREALAQLKDL--PLEDLPFGLCLFEAD 358

Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424
           WHQGV+GILASR+KER+HRP IAFA AGDG LKGS RS+ G H+RDAL+ +   +PG++ 
Sbjct: 359 WHQGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAAKHPGLIS 418

Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484
           KFGGHAMAAGLSL +  F  F   F   V   L    L G +++DG LS  E  +E+A+ 
Sbjct: 419 KFGGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEEDLTGRLLTDGQLSVEEFHLELARA 478

Query: 485 LRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544
           LR+AGPWGQ FPEP+F G F+L+QQR+VGERHLK++++   G   LDGIAFNVD  +WP+
Sbjct: 479 LRNAGPWGQHFPEPMFHGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVDREIWPN 538

Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576
             VR  +LAYKLD+NE+RG  S+Q+++ +I P
Sbjct: 539 PTVRWAELAYKLDVNEYRGQESVQLMVAHIAP 570