Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 571 a.a., exonuclease RecJ from Pseudomonas syringae pv. syringae B728a

 Score =  660 bits (1704), Expect = 0.0
 Identities = 328/572 (57%), Positives = 431/572 (75%), Gaps = 2/572 (0%)

Query: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64
           +++  R + +T     +LPPLL RLYA+RGV    EL++S+  ++P+QQL G++ AV++L
Sbjct: 1   MRIEPRPLPDTLPFLGDLPPLLTRLYAARGVACEAELDKSLARLIPYQQLKGIDAAVDLL 60

Query: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124
             A REG R+++VGDFDADGAT++ + VL +R LG  ++DYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VTALREGQRMLIVGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184
           A  R  QL++TVDNGISS  GV  A++ G+ V+VTDHHLPG  LPAA+AI+NPN   C F
Sbjct: 121 ALQREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTF 180

Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244
           PSKSLAGVGV FY+++ALR  LR+ GWF+    A PNL ELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKSLAGVGVIFYVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANN 240

Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304
           RIL  QG+ RIRAG+ RPG++A+LEVA R+  ++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 241 RILVHQGLMRIRAGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGI 300

Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364
             LLCD+   AR +A +LD LNQ RK IEQGMQ EAL   + L    +++P GL ++  E
Sbjct: 301 ECLLCDDPTLAREMAVQLDELNQDRKSIEQGMQREALAQLKDL--PLESMPFGLCLFDAE 358

Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424
           WHQGV+GILASR+KER+HRP IAFA AG+G LKGS RS+ G H+RDAL+ +   +P ++ 
Sbjct: 359 WHQGVIGILASRLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLIS 418

Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484
           KFGGHAMAAGLSL E+ F  F   F + V   LD   L G ++SDG L+  E  +E+A+ 
Sbjct: 419 KFGGHAMAAGLSLPEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARA 478

Query: 485 LRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544
           LR+AGPWGQ FPEPLF G F+L++QR+VGERHLK++++   G   LDGIAF VD  +WP+
Sbjct: 479 LRNAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDRDIWPN 538

Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576
             +R V+LAYKLD+NEFRGN ++Q+++ +I P
Sbjct: 539 PNIRWVELAYKLDLNEFRGNETVQLMVVHIAP 570