Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 684 a.a., exonuclease RecJ from Synechococcus elongatus PCC 7942

 Score =  257 bits (656), Expect = 1e-72
 Identities = 183/565 (32%), Positives = 286/565 (50%), Gaps = 35/565 (6%)

Query: 22  LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76
           LPP+L ++  +RG+ +  +    +K        P ++   + ++V +L  A R G RI +
Sbjct: 49  LPPVLAQVLINRGLGAIADARDYLKPEQQELPDPREEFEDLVESVLLLEKAIRSGDRIAI 108

Query: 77  VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136
            GD+DADG TSTAL +   R LG +  +Y +P+R ++GYG++  +V++  A G ++++TV
Sbjct: 109 CGDYDADGMTSTALLLRTFRQLG-AKAEYAIPSRMQEGYGINERIVEEFAASGVRVVLTV 167

Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196
           DNGI+++  +  AR LG+ VIVTDHH     LP A AI+NP L     P   LAGVGVA+
Sbjct: 168 DNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANAILNPKLLPEESPYHGLAGVGVAY 227

Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256
            L L +          ++ N     +  LL+L  LGT+AD+ PL   NR    +G+ R+ 
Sbjct: 228 VLALCVA---------EQFNRQAELIRPLLELYTLGTIADLAPLTGVNRRWLQRGL-RLL 277

Query: 257 AGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314
                 G++AL+E A      + L   D+GF LGPR+NA GR+ D  V + LL  ++   
Sbjct: 278 PQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGRIGDPQVVIELLTTEDRDR 337

Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374
           A+ LA   +  NQ R+ +   +  EA+ + E  E   +     L +  P WH GV+GI+A
Sbjct: 338 AQELAGICEVTNQERRGLCDRITEEAIAIVE-AEGFDNRQTAVLVLAQPNWHHGVIGIVA 396

Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434
           SR+ ER+  PV   +   DG L+GS R      +  ALE        ++ +FGGH  A G
Sbjct: 397 SRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC----RDVLGRFGGHRAAGG 452

Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494
            SL  +    ++ R      + L     +  +  D  L  A  ++ + +  +   P+G  
Sbjct: 453 FSLSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASLNLFEQQQQLQPFGIA 512

Query: 495 FPEPLF-DGHFRLLQQRLV--GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE-- 549
             EPL+   +  +L QR +  G+ HLK+ +    G   +  + +      W D  V E  
Sbjct: 513 NDEPLYWAKNLAILDQRRMGNGQEHLKLTLS--DGQSKVTAVYWR-----WGDRPVPEDR 565

Query: 550 VQLAYKLDINEFRGNRSLQIIIDNI 574
           V +AY L  N +   R LQ+ I  I
Sbjct: 566 VDVAYYLRENIWNDRRELQLEIAGI 590