Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 566 a.a., single-stranded-DNA-specific exonuclease RecJ from Pedobacter sp. GW460-11-11-14-LB5

 Score =  273 bits (697), Expect = 2e-77
 Identities = 172/529 (32%), Positives = 280/529 (52%), Gaps = 34/529 (6%)

Query: 54  LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113
           +  ++ AV  +  A     +I++ GD+D DG TS AL+      L   NI+Y +P+R+ +
Sbjct: 61  MKDMDVAVARIEAALAAQEKILIYGDYDVDGTTSVALAFSFFSQL-TKNIEYYIPDRYLE 119

Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173
           GYG+S   +D A   G  LI+ +D GI S   +++A +LG+  I+ DHHLPGD LP A A
Sbjct: 120 GYGISTAGIDYASENGFSLIIALDCGIKSIDKIDYANTLGVDFIICDHHLPGDELPQAIA 179

Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233
           +++P   DC +P K LAG G+ F L          Q +  +  +      + LDLV +  
Sbjct: 180 VLDPKRSDCEYPFKELAGCGIGFKLA---------QAYAQKHQLPKETYLQYLDLVMVSI 230

Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293
            AD+VP+   NRIL + G+ ++    C  G++AL+EV+ +  +  + +D+ F LGPR+NA
Sbjct: 231 AADIVPVVGENRILAYYGLRKLNTNPCE-GLRALMEVSGK-TENYSITDVVFTLGPRINA 288

Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL---CEKLERS 350
           AGR+D     VA+LLC     A   +  ++  N  RK  +Q +  EAL L    + L   
Sbjct: 289 AGRIDHAKHAVAMLLCQVDSNALEQSELINLKNTERKTYDQDITREALALIGESDILINK 348

Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410
           + T+     +++  WH+GV+GI+ASR+ E+++RP I    + +G + GS RS+ G  + +
Sbjct: 349 KTTV-----VFNENWHKGVIGIVASRLTEKYYRPTIVLTKS-NGHVAGSCRSVVGFDLYE 402

Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470
           AL     L    + ++GGH  AAGL++++     F  +F E+V+  +   LL   +  D 
Sbjct: 403 ALSGCADL----LDQYGGHKFAAGLTMQQHNVDAFADKFEEIVSASITEELLTPMIRIDA 458

Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQR--LVGERHLKVMVEPVGGGP 528
            +  A++  +  ++L   GP+G     P+F  H   L Q    VG  HLK+ ++     P
Sbjct: 459 EIELAQIDGKFYRVLSQMGPFGPENMAPIFVTHNVYLAQHAMAVGANHLKINIKQ-QNSP 517

Query: 529 LLDGIAFNV---DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574
           + +GIAF +   +  L P        + Y L+ N +R  + LQ+ I  I
Sbjct: 518 IFEGIAFGLAEFENLLQPK---VPFSVCYTLEENVWRDKKRLQLNIKGI 563