Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  652 bits (1681), Expect = 0.0
 Identities = 322/571 (56%), Positives = 434/571 (76%), Gaps = 2/571 (0%)

Query: 7   LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYN 66
           +RR  VD++  LP  LPPLLR+LYA RGV  + E E  +KG+L    + G++ A +++ +
Sbjct: 6   IRRPTVDDS-HLPTHLPPLLRQLYARRGVLPS-ECELVLKGLLRPDTMKGLDLAAKLIAD 63

Query: 67  AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126
           A +    I++VGDFDADGATST++ +LA+R +G S +DYL+PNRF+ GYGLSPE+V  A 
Sbjct: 64  AMQLDKSILIVGDFDADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAA 123

Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186
           ++ AQL++TVDNGISS  GV  A++ G+ V++TDHHLPG  LP A+AI+NPN   C F S
Sbjct: 124 SKQAQLLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFAS 183

Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246
           KS+AGVGVAFYLM ALR  LR + W+  R IA PNL  LLD+VALGTVADVV LD NNRI
Sbjct: 184 KSIAGVGVAFYLMTALRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRI 243

Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306
           L   G+ R+R+G+CR GI ALLEVA R+  ++ ASD GFA+GPRLNAAGRLD+M++GV  
Sbjct: 244 LVEAGLQRVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVET 303

Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366
           LLC+++  AR +A ELD+LNQ R+E+E GMQ EAL   E L+ + + LP G+A++  +WH
Sbjct: 304 LLCEDMMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWH 363

Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426
           QGV+GILASRIK+++HRPVIAFA AG+G +KGS RSI+GLHMRD LE +++ +PG++ KF
Sbjct: 364 QGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKF 423

Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486
           GGHAMAAGL+L+   F  F + + + V E L P  L GE+ SDG L+P E+T+E+AQLLR
Sbjct: 424 GGHAMAAGLTLKSGGFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLR 483

Query: 487 DAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546
           +AGPWGQ F EPLFDG+F+++QQR+VG+RHLK+++E   G  +LD IAFNV    WPD  
Sbjct: 484 NAGPWGQSFEEPLFDGYFKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDAT 543

Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577
           ++  ++ YKLD+NE+RGN +LQ++++ I P+
Sbjct: 544 IQHARIVYKLDVNEYRGNFTLQLMVEQIEPM 574