Pairwise Alignments

Query, 592 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 459 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  249 bits (635), Expect = 2e-70
 Identities = 142/329 (43%), Positives = 208/329 (63%), Gaps = 8/329 (2%)

Query: 262 NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRN 321
           N  +   + Q++G+ R +R+   ++ R APS S+V++ GESGTGKE+VARAIH  S R  
Sbjct: 135 NLEERYGMHQIIGKSRAIRETLGMVDRAAPSRSTVLISGESGTGKELVARAIHFSSPRNK 194

Query: 322 KPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLML 381
            PF+++NC A+   +LESELFG+ KG+FTGA A  + G  + A  GTLFLDEIG++   L
Sbjct: 195 GPFVSVNCMALNPGVLESELFGHEKGSFTGAVAM-RRGRFEQAGGGTLFLDEIGELTPEL 253

Query: 382 QAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITL 441
           Q KLLR ++ R    +G +  ++VDIRI++ATN+NL + + +G FREDLFYRLNV+ I L
Sbjct: 254 QVKLLRVLQERRFERVGGTEEVEVDIRIVAATNKNLQEEVEKGNFREDLFYRLNVVHIAL 313

Query: 442 PPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV 501
           PPLRER+EDI LLV +F+    R  G       P+ ++ +  + WPGN+R+L N++E  +
Sbjct: 314 PPLRERREDIHLLVAHFVDKLARENGVTPKTFTPEALDYMTGYEWPGNIRQLQNVVERCL 373

Query: 502 NVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALS 561
            V+ SG+ I    LPP L +  +  +S V ++    L L D     LE +E  +IR AL 
Sbjct: 374 -VLVSGDTIRVDDLPPELRDEESQLKSAV-DLLPVQLDLAD----TLERIEAALIRRALV 427

Query: 562 RHN-SKKQVADELGIGIATLYRKIKKYEL 589
           R +  + + A+ L I  + L  K+KKY +
Sbjct: 428 RADFVQVKAAELLAISKSLLQYKLKKYNI 456